* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘rstan’ ... ** package ‘rstan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.0 (rc4-1)’ using C++17 make[1]: Entering directory '/tmp/RtmpDlXOpD/R.INSTALLce562c8b8d9a/rstan/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c Module.cpp -o Module.o In file included from Module.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/accumulate_adjoints.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from Module.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/accumulate_adjoints.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from Module.cpp:5: ../inst/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from Module.cpp:5: ../inst/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c chains.cpp -o chains.o In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here 304 | temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 13 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o In file included from init.cpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c misc.cpp -o misc.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c pointer-tools.cpp -o pointer-tools.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sparse_extractors.cpp -o sparse_extractors.o In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from sparse_extractors.cpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from sparse_extractors.cpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here 304 | temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 15 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit_base.cpp -o stan_fit_base.o In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit_rccp.cpp -o stan_fit_rccp.o In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c version.cpp -o version.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o rstan.so Module.o chains.o init.o misc.o pointer-tools.o sparse_extractors.o stan_fit_base.o stan_fit_rccp.o version.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit.cpp -o stan_fit.o In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stan_fit.cpp:20: ../inst/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stan_fit.cpp:20: ../inst/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | <boost/typeof/incr_registration_group.hpp> | ^ stan_fit.cpp:1184:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1184 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here 304 | temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 18 warnings generated. ar -rs ../inst/lib//libStanServices.a stan_fit.o stan_fit_base.o ar: creating ../inst/lib//libStanServices.a make[1]: Leaving directory '/tmp/RtmpDlXOpD/R.INSTALLce562c8b8d9a/rstan/src' make[1]: Entering directory '/tmp/RtmpDlXOpD/R.INSTALLce562c8b8d9a/rstan/src' make[1]: Leaving directory '/tmp/RtmpDlXOpD/R.INSTALLce562c8b8d9a/rstan/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-rstan/00new/rstan/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstan)