- using R Under development (unstable) (2025-10-19 r88945)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (7)
Debian flang-new version 19.1.7 (7)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘rmzqc/DESCRIPTION’ ... OK
- this is package ‘rmzqc’ version ‘0.7.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘rmzqc’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/9s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/9s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
toAnalysisSoftware 3.891 0.223 7.41
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [16s/21s] OK
Running ‘testthat.R’ [16s/20s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [22s/28s] OK
- checking PDF version of manual ... [7s/10s] OK
- checking HTML version of manual ... [3s/4s] NOTE
Found the following HTML validation problems:
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MzQCanalysisSoftware.html:245:1 (MzQCanalysisSoftware.Rd:142): Warning: missing </ul> before </div>
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MzQCbaseQuality.html:256:1 (MzQCbaseQuality.Rd:139): Warning: missing </ul> before </div>
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MzQCqualityMetric.html:241:1 (MzQCqualityMetric.Rd:138): Warning: missing </ul> before </div>
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MzQCrunQuality.html:91:1 (MzQCrunQuality.Rd:46): Warning: missing </ul> before </div>
MzQCsetQuality.html:92:1 (MzQCsetQuality.Rd:47): Warning: missing </ul> before </div>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE