• using R Under development (unstable) (2025-07-15 r88411)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘rgbif/DESCRIPTION’ ... OK
• this is package ‘rgbif’ version ‘3.8.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘rgbif’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s/29s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [27s/69s] ERROR   Running ‘test-all.R’ [27s/68s] Running the tests in ‘tests/test-all.R’ failed. Complete output:   > library(testthat)   > test_check("rgbif")   Loading required package: rgbif   [ FAIL 7 | WARN 2 | SKIP 137 | PASS 1271 ]      ══ Skipped tests (137) ═════════════════════════════════════════════════════════   • On CRAN (137): 'test-country_codes.r:4:3', 'test-dataset_export.R:3:1',     'test-dataset_gridded.R:3:1', 'test-dataset_uuid_funs.R:19:3',     'test-dataset_uuid_funs.R:78:3', 'test-derived_dataset.R:3:3',     'test-derived_dataset.R:51:3', 'test-derived_dataset.R:186:3',     'test-derived_dataset.R:347:3', 'test-downloads.R:3:3',     'test-downloads.R:16:3', 'test-downloads.R:43:3', 'test-downloads.R:80:3',     'test-downloads.R:87:3', 'test-downloads.R:101:3', 'test-downloads.R:116:3',     'test-elevation.R:3:3', 'test-elevation.R:16:3', 'test-elevation.R:32:3',     'test-elevation.R:59:3', 'test-elevation.R:84:3', 'test-enumeration.r:4:3',     'test-enumeration.r:23:3', 'test-gbif_geocode.R:3:5',     'test-gbif_geocode.R:60:3', 'test-gbif_issues_lookup.R:4:3',     'test-gbif_issues_lookup.R:39:3', 'test-gbif_names.R:4:3',     'test-gbif_names.R:28:3', 'test-gbif_photos.R:4:3', 'test-lit_search.R:5:5',     'test-lit_search.R:120:3', 'test-map_fetch.R:3:1', 'test-mvt_fetch.R:4:3',     'test-mvt_fetch.R:15:3', 'test-name_backbone.r:29:3',     'test-name_backbone_checklist.R:4:3', 'test-name_backbone_checklist.R:184:3',     'test-name_backbone_checklist.R:273:3',     'test-name_backbone_checklist.R:368:3',     'test-name_backbone_checklist.R:466:3',     'test-name_backbone_checklist.R:478:3', 'test-name_lookup.r:4:3',     'test-name_lookup.r:61:3', 'test-name_lookup.r:96:3',     'test-name_lookup.r:115:3', 'test-name_lookup.r:130:3',     'test-name_lookup.r:164:3', 'test-name_suggest.r:58:5',     'test-name_usage.r:4:3', 'test-occ_count.r:83:3', 'test-occ_data.R:7:3',     'test-occ_data.R:38:3', 'test-occ_data.R:71:3', 'test-occ_data.R:114:3',     'test-occ_data.R:188:3', 'test-occ_data.R:334:3', 'test-occ_data.R:348:3',     'test-occ_data.R:363:3', 'test-occ_data.R:381:3', 'test-occ_data.R:398:3',     'test-occ_data.R:415:3', 'test-occ_data.R:434:3', 'test-occ_data.R:451:3',     'test-occ_data.R:468:3', 'test-occ_data.R:485:3', 'test-occ_data.R:502:3',     'test-occ_data.R:519:3', 'test-occ_data.R:537:3', 'test-occ_data.R:555:3',     'test-occ_data.R:573:3', 'test-occ_data.R:588:3', 'test-occ_data.R:604:3',     'test-occ_download.R:13:3', 'test-occ_download_cached.R:10:3',     'test-occ_download_cached.R:75:3', 'test-occ_download_cached.R:115:3',     'test-occ_download_cancel.R:2:3', 'test-occ_download_cancel.R:19:3',     'test-occ_download_cancel.R:27:3',     'test-occ_download_dataset_activity.R:4:3',     'test-occ_download_dataset_activity.R:26:3',     'test-occ_download_datasets.R:4:3', 'test-occ_download_datasets.R:27:3',     'test-occ_download_get.R:2:3', 'test-occ_download_import.R:2:3',     'test-occ_download_import.R:17:3', 'test-occ_download_import.R:40:3',     'test-occ_download_import.R:57:3', 'test-occ_download_import.R:83:3',     'test-occ_download_list.R:10:3', 'test-occ_download_list.R:28:3',     'test-occ_download_list.R:51:3', 'test-occ_download_meta.R:2:3',     'test-occ_download_meta.R:37:3', 'test-occ_download_prep.R:2:3',     'test-occ_download_prep.R:37:3', 'test-occ_download_prep.R:54:3',     'test-occ_download_queue.R:14:3', 'test-occ_download_queue.R:36:3',     'test-occ_download_queue.R:77:3', 'test-occ_download_sql.R:3:3',     'test-occ_download_sql.R:17:3', 'test-occ_download_wait.R:2:3',     'test-occ_download_wait.R:21:3', 'test-occ_get.r:43:3',     'test-occ_search.r:7:3', 'test-occ_search.r:35:3', 'test-occ_search.r:67:3',     'test-occ_search.r:101:3', 'test-occ_search.r:114:3',     'test-occ_search.r:128:3', 'test-occ_search.r:143:3',     'test-occ_search.r:161:3', 'test-occ_search.r:178:3',     'test-occ_search.r:195:3', 'test-occ_search.r:214:3',     'test-occ_search.r:231:3', 'test-occ_search.r:248:3',     'test-occ_search.r:266:3', 'test-occ_search.r:283:3',     'test-occ_search.r:300:3', 'test-occ_search.r:318:3',     'test-occ_search.r:336:3', 'test-occ_search.r:354:3',     'test-occ_search.r:369:3', 'test-occ_search.r:386:3',     'test-occ_search.r:436:3', 'test-occ_search.r:510:3',     'test-organizations.r:4:3', 'test-organizations.r:67:3',     'test-print_gbif.R:4:3', 'test-print_gbif.R:23:3', 'test-wkt_large.R:36:3',     'test-wkt_large.R:72:3', 'test-wkt_large.R:91:3', 'test-wkt_parse.R:34:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-oai.R:5:5'): gbif_oai_identify ─────────────────────────────────   Error in `path_to_connection(x)`: '' does not exist in current working directory   ('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgbif.Rcheck/tests/testthat').   Backtrace:        ▆     1. ├─vcr::use_cassette(...) at test-oai.R:4:3     2. │ └─cassette$call_block(...)     3. └─rgbif::gbif_oai_identify() at test-oai.R:5:5     4. ├─base::as.list(oai::id(url = gboai(), ...))     5. └─oai::id(url = gboai(), ...)     6. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))     7. └─base::lapply(url, id_, as = as, ...)     8. └─oai (local) FUN(X[[i]], ...)     9. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])    10. │ ├─base::lapply(...)    11. │ └─xml2::xml_children(m)    12. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))    13. ├─xml2::xml_children(xml2::read_xml(tt))    14. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))    15. ├─xml2::read_xml(tt)    16. └─xml2:::read_xml.character(tt)    17. └─xml2:::path_to_connection(x)    18. └─xml2:::check_path(path)    19. └─cli::cli_abort(msg, call = call)    20. └─rlang::abort(...)   ── Error ('test-oai.R:15:5'): gbif_oai_list_metadataformats ────────────────────   Error in `path_to_connection(x)`: '' does not exist in current working directory   ('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgbif.Rcheck/tests/testthat').   Backtrace:        ▆     1. ├─vcr::use_cassette(...) at test-oai.R:14:3     2. │ └─cassette$call_block(...)     3. └─rgbif::gbif_oai_list_metadataformats() at test-oai.R:15:5     4. └─oai::list_metadataformats(url = gboai(), id = id, ...)     5. └─oai:::one_mf(id, url, ...)     6. ├─xml2::read_xml(out)     7. └─xml2:::read_xml.character(out)     8. └─xml2:::path_to_connection(x)     9. └─xml2:::check_path(path)    10. └─cli::cli_abort(msg, call = call)    11. └─rlang::abort(...)   ── Error ('test-oai.R:25:5'): gbif_oai_list_sets ───────────────────────────────   Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-22_06-06-49.88759914bb4f5a8b2332xml   Backtrace:       ▆    1. ├─vcr::use_cassette(...) at test-oai.R:24:3    2. │ └─cassette$call_block(...)    3. └─rgbif::gbif_oai_list_sets() at test-oai.R:25:5    4. └─oai::list_sets(url = gboai(), token = token, as = as, ...)    5. └─oai:::while_oai(url, args, token, as, ...)   ── Error ('test-oai.R:37:5'): gbif_oai_list_identifiers ────────────────────────   Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-22_06-06-50.11375614bb4f5de27d4axml   Backtrace:       ▆    1. ├─vcr::use_cassette(...) at test-oai.R:35:3    2. │ └─cassette$call_block(...)    3. └─rgbif::gbif_oai_list_identifiers(from = "2019-01-15", until = "2019-01-30") at test-oai.R:37:5    4. └─oai::list_identifiers(...)    5. └─oai:::while_oai(url, args, token, as, ...)   ── Error ('test-oai.R:59:5'): gbif_oai_get_records ─────────────────────────────   Error in `path_to_connection(x)`: '' does not exist in current working directory   ('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgbif.Rcheck/tests/testthat').   Backtrace:        ▆     1. ├─vcr::use_cassette(...) at test-oai.R:58:3     2. │ └─cassette$call_block(...)     3. └─rgbif::gbif_oai_get_records("9c4e36c1-d3f9-49ce-8ec1-8c434fa9e6eb") at test-oai.R:59:5     4. └─oai::get_records(...)     5. ├─stats::setNames(...)     6. └─base::lapply(...)     7. └─oai (local) FUN(X[[i]], ...)     8. ├─xml2::read_xml(tt)     9. └─xml2:::read_xml.character(tt)    10. └─xml2:::path_to_connection(x)    11. └─xml2:::check_path(path)    12. └─cli::cli_abort(msg, call = call)    13. └─rlang::abort(...)   ── Failure ('test-occ_data.R:179:3'): scientificName basic use works - no synonyms ──   hh$data$scientificName[1] not equal to "Pipistrellus hesperus (H.Allen, 1864)".   1/1 mismatches   x[1]: "Parastrellus hesperus (H.Allen, 1864)"   y[1]: "Pipistrellus hesperus (H.Allen, 1864)"   ── Failure ('test-occ_search.r:501:3'): scientificName basic use works - no synonyms ──   hh$data$scientificName[1] not equal to "Pipistrellus hesperus (H.Allen, 1864)".   1/1 mismatches   x[1]: "Parastrellus hesperus (H.Allen, 1864)"   y[1]: "Pipistrellus hesperus (H.Allen, 1864)"      [ FAIL 7 | WARN 2 | SKIP 137 | PASS 1271 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... [5s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR