* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘rehh’ ...
** package ‘rehh’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 18.1.0 (rc4-1)’
make[1]: Entering directory '/tmp/Rtmpe4sgr8/R.INSTALL3373e03a0a4d4a/rehh/src'
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_ASNEWICK.c -o CALL_ASNEWICK.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_EHH.c -o CALL_EHH.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_EHHS.c -o CALL_EHHS.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_FURCATION.c -o CALL_FURCATION.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_INTEGRAL.c -o CALL_INTEGRAL.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_PAIRWISE_HAPLEN.c -o CALL_PAIRWISE_HAPLEN.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_SCAN_HH.c -o CALL_SCAN_HH.o
CALL_SCAN_HH.c:41:6: warning: unused variable 'nbr_threads' [-Wunused-variable]
   41 |         int nbr_threads = asInteger(nbr_threads_);
      |             ^~~~~~~~~~~
1 warning generated.
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_SCAN_HH_FULL.c -o CALL_SCAN_HH_FULL.o
CALL_SCAN_HH_FULL.c:31:7: warning: unused variable 'nbr_threads' [-Wunused-variable]
   31 |   int nbr_threads = asInteger(nbr_threads_);
      |       ^~~~~~~~~~~
1 warning generated.
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CALL_SFS_TESTS.c -o CALL_SFS_TESTS.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c asnewick.c -o asnewick.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calc_ehh.c -o calc_ehh.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calc_ehhs.c -o calc_ehhs.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calc_furcation.c -o calc_furcation.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calc_pairwise_haplen.c -o calc_pairwise_haplen.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calc_sfs_tests.c -o calc_sfs_tests.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c haplotypes.c -o haplotypes.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c haplotypes_with_lengths.c -o haplotypes_with_lengths.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c haplotypes_with_nodes.c -o haplotypes_with_nodes.o
haplotypes_with_nodes.c:58:9: warning: variable 'index' set but not used [-Wunused-but-set-variable]
   58 |     int index = 0;
      |         ^
1 warning generated.
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c homozygosity.c -o homozygosity.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c integrate.c -o integrate.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c sfs_moments.c -o sfs_moments.o
clang-18 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o rehh.so CALL_ASNEWICK.o CALL_EHH.o CALL_EHHS.o CALL_FURCATION.o CALL_INTEGRAL.o CALL_PAIRWISE_HAPLEN.o CALL_SCAN_HH.o CALL_SCAN_HH_FULL.o CALL_SFS_TESTS.o asnewick.o calc_ehh.o calc_ehhs.o calc_furcation.o calc_pairwise_haplen.o calc_sfs_tests.o haplotypes.o haplotypes_with_lengths.o haplotypes_with_nodes.o homozygosity.o init.o integrate.o sfs_moments.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpe4sgr8/R.INSTALL3373e03a0a4d4a/rehh/src'
make[1]: Entering directory '/tmp/Rtmpe4sgr8/R.INSTALL3373e03a0a4d4a/rehh/src'
make[1]: Leaving directory '/tmp/Rtmpe4sgr8/R.INSTALL3373e03a0a4d4a/rehh/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-rehh/00new/rehh/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rehh)