- using R Under development (unstable) (2025-11-23 r89052)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 21.1.5 (1)
Debian flang version 21.1.5 (1)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘recforest/DESCRIPTION’ ... OK
- this is package ‘recforest’ version ‘1.0.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘recforest’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [16s/21s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [10s/13s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [140s/177s] ERROR
Running ‘testthat.R’ [140s/177s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(recforest)
>
> test_check("recforest")
since n_bootstrap is not provided, it is set to 2/3 of the sample size: 269
Using sequential processing for training
training tree 1/2
[1] "creating terminal node #1"
training tree 2/2
[1] "creating terminal node #1"
Saving _problems/test-train_forest-300.R
Saving _problems/test-train_forest-315.R
Saving _problems/test-train_forest-337.R
since n_bootstrap is not provided, it is set to 2/3 of the sample size: 269
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golden_master.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-train_forest.R:285:5'): train_forest and predict_forest works with method GL ──
Expected `trained_forest$metrics` to equal `structure(...)`.
Differences:
actual vs expected
c_index mse_imse mse_iscore
- actual[1, ] 0.7843743 18517.19 376.8388
+ expected[1, ] 0.7852244 18519.40 374.6235
`actual$c_index`: 0.78437
`expected$c_index`: 0.78522
`actual$mse_imse`: 18517.2
`expected$mse_imse`: 18519.4
`actual$mse_iscore`: 376.8
`expected$mse_iscore`: 374.6
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest.R:251:3
2. │ └─withr::with_preserve_seed(...)
3. └─testthat::expect_equal(...) at test-train_forest.R:285:5
── Failure ('test-train_forest.R:301:5'): train_forest and predict_forest works with method GL ──
Expected `trained_forest$tree_metrics` to equal `list(...)`.
Differences:
`actual[[1]]$c_index`: 0.794279
`expected[[1]]$c_index`: 0.794180
`actual[[1]]$mse_imse`: 18613.5
`expected[[1]]$mse_imse`: 18618.2
`actual[[1]]$mse_iscore`: 280.6
`expected[[1]]$mse_iscore`: 275.9
`actual[[2]]$c_index`: 0.7745
`expected[[2]]$c_index`: 0.7763
`actual[[2]]$mse_imse`: 18420.88
`expected[[2]]$mse_imse`: 18420.66
`actual[[2]]$mse_iscore`: 473.11
`expected[[2]]$mse_iscore`: 473.34
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest.R:251:3
2. │ └─withr::with_preserve_seed(...)
3. └─testthat::expect_equal(...) at test-train_forest.R:301:5
── Failure ('test-train_forest.R:323:5'): train_forest and predict_forest works with method GL ──
Expected `predictions[1:10]` to equal `c(...)`.
Differences:
actual | expected
[1] 0.076394850 | 0.076394850 [1]
[2] 0.671167690 - 0.670711027 [2]
[3] 1.097814648 - 1.094352976 [3]
[4] 0.697723088 - 0.697103214 [4]
[5] 1.142139822 - 1.138279300 [5]
[6] 0.047180539 | 0.047180539 [6]
[7] 0.936614157 - 0.934632879 [7]
[8] 0.390103568 - 0.390142244 [8]
[9] 0.557216721 - 0.557213915 [9]
[10] 0.850929439 - 0.849408106 [10]
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest.R:251:3
2. │ └─withr::with_preserve_seed(...)
3. └─testthat::expect_equal(...) at test-train_forest.R:323:5
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 61 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [15s/19s] OK
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR