* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘rchime’ ...
** this is package ‘rchime’ version ‘0.1.1’
** package ‘rchime’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 22.1.8 (1+b2)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcVFzr5/R.INSTALL3310df45c129dd/rchime/src'
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c align_simd.cc -o align_simd.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c bitmap.cc -o bitmap.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c chimera_vsearch.cpp -o chimera_vsearch.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c cigar.cpp -o cigar.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c cpu.cc -o cpu.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c db.cc -o db.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c dbindex.cc -o dbindex.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c linmemalign.cc -o linmemalign.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c maps.cpp -o maps.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c minheap.cc -o minheap.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c rcpp_rchime.cpp -o rcpp_rchime.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c searchcore.cc -o searchcore.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c seqcmp.cpp -o seqcmp.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c unique.cc -o unique.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c util.cc -o util.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppXsimd/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2  -fpic  -g -O3 -Wall -pedantic   -c vsearch_main.cc -o vsearch_main.o
clang++-22 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o rchime.so RcppExports.o align_simd.o bitmap.o chimera_vsearch.o cigar.o cpu.o db.o dbindex.o linmemalign.o maps.o minheap.o rcpp_rchime.o searchcore.o seqcmp.o unique.o util.o vsearch_main.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcVFzr5/R.INSTALL3310df45c129dd/rchime/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcVFzr5/R.INSTALL3310df45c129dd/rchime/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcVFzr5/R.INSTALL3310df45c129dd/rchime/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-rchime/00new/rchime/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rchime)