• using R Under development (unstable) (2025-10-19 r88945)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (7)     Debian flang-new version 19.1.7 (7)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘qsub/DESCRIPTION’ ... OK
• this is package ‘qsub’ version ‘1.1.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘qsub’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R   Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’   Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/4s] OK   Running ‘testthat.R’ [2s/4s]
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [1s/2s] NOTE Found the following HTML validation problems: cat_remote.html:56:1 (cat_remote.Rd:16): Warning: missing </ul> before </div> create_ssh_connection.html:47:1 (create_ssh_connection.Rd:11): Warning: missing </ul> before </div> get_default_qsub_config.html:47:1 (get_default_qsub_config.Rd:10): Warning: missing </ul> before </div> instantiate_qsub_config.html:48:1 (instantiate_qsub_config.Rd:12): Warning: missing </ul> before </div> is_job_running.html:46:1 (is_job_running.Rd:10): Warning: missing </ul> before </div> is_qsub_config.html:46:1 (is_qsub_config.Rd:10): Warning: missing </ul> before </div> is_remote_local.html:46:1 (is_remote_local.Rd:10): Warning: missing </ul> before </div> ls_remote.html:56:1 (ls_remote.Rd:16): Warning: missing </ul> before </div> mkdir_remote.html:57:1 (mkdir_remote.Rd:17): Warning: missing </ul> before </div> qacct.html:46:1 (qacct.Rd:10): Warning: missing </ul> before </div> qacct_remote.html:52:1 (qacct_remote.Rd:14): Warning: missing </ul> before </div> qstat_j.html:46:1 (qstat_j.Rd:10): Warning: missing </ul> before </div> qstat_j_remote.html:52:1 (qstat_j_remote.Rd:14): Warning: missing </ul> before </div> qstat_remote.html:52:1 (qstat_remote.Rd:14): Warning: missing </ul> before </div> qsub_retrieve.html:54:1 (qsub_retrieve.Rd:14): Warning: missing </ul> before </div> rm_remote.html:64:1 (rm_remote.Rd:20): Warning: missing </ul> before </div> test_qsub_config.html:46:1 (test_qsub_config.Rd:10): Warning: missing </ul> before </div> write_remote.html:60:1 (write_remote.Rd:18): Warning: missing </ul> before </div>
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 NOTEs