Install log for 'pumBayes'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘pumBayes’ ...
** this is package ‘pumBayes’ version ‘1.0.0’
** package ‘pumBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ9IABP/R.INSTALL18574c56a30ea0/pumBayes/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c rtn1.cpp -o rtn1.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c three_utility_probit_helper_functions.cpp -o three_utility_probit_helper_functions.o
three_utility_probit_helper_functions.cpp:571:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  571 |         if (!is_finite(vote_m(k, j))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:819:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  819 |         if (!is_finite(vote_m(j, k))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:1115:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
 1115 |         if (!is_finite(case_vote_m(i, j))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:1163:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
 1163 |         if (!is_finite(case_vote_m(i, j))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:1207:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
 1207 |         if (!is_finite(case_vote_m(i, j))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:1249:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
 1249 |         if (!is_finite(case_vote_m(ind, j))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
three_utility_probit_helper_functions.cpp:1518:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
 1518 |         if (!is_finite(vote_m(j, k))) {
      |              ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
7 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o pumBayes.so RcppExports.o rtn1.o three_utility_probit_helper_functions.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ9IABP/R.INSTALL18574c56a30ea0/pumBayes/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ9IABP/R.INSTALL18574c56a30ea0/pumBayes/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ9IABP/R.INSTALL18574c56a30ea0/pumBayes/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-pumBayes/00new/pumBayes/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pumBayes)