Install log for 'psqn'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘psqn’ ...
** this is package ‘psqn’ version ‘0.3.2’
** package ‘psqn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHXRT0S/R.INSTALL22ad95280cbd04/psqn/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c r-api.cpp -o r-api.o
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:25:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/iterator:68:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/streambuf_iterator.h:37:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/streambuf:45:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/ios_base.h:43:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/locale_classes.h:42:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/string:56:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/basic_string.h:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/ext/alloc_traits.h:36:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:33:
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:7: warning: destructor called on non-final 'r_worker_psqn' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  166 |       __pointer->~_Tp();
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:226:9: note: in instantiation of function template specialization 'std::_Destroy<r_worker_psqn>' requested here
  226 |           std::_Destroy(std::__addressof(*__first));
      |                ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:1045:12: note: in instantiation of function template specialization 'std::_Destroy<r_worker_psqn *>' requested here
 1045 |       std::_Destroy(__first, __last);
      |            ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_vector.h:802:7: note: in instantiation of function template specialization 'std::_Destroy<r_worker_psqn *, r_worker_psqn>' requested here
  802 |         std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish,
      |              ^
r-api.cpp:404:30: note: in instantiation of member function 'std::vector<r_worker_psqn>::~vector' requested here
  404 |   std::vector<r_worker_psqn> funcs;
      |                              ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:19: note: qualify call to silence this warning
  166 |       __pointer->~_Tp();
      |                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:7: warning: destructor called on non-final 'r_worker_optimizer_generic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  166 |       __pointer->~_Tp();
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:226:9: note: in instantiation of function template specialization 'std::_Destroy<r_worker_optimizer_generic>' requested here
  226 |           std::_Destroy(std::__addressof(*__first));
      |                ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:1045:12: note: in instantiation of function template specialization 'std::_Destroy<r_worker_optimizer_generic *>' requested here
 1045 |       std::_Destroy(__first, __last);
      |            ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_vector.h:802:7: note: in instantiation of function template specialization 'std::_Destroy<r_worker_optimizer_generic *, r_worker_optimizer_generic>' requested here
  802 |         std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish,
      |              ^
r-api.cpp:1284:43: note: in instantiation of member function 'std::vector<r_worker_optimizer_generic>::~vector' requested here
 1284 |   std::vector<r_worker_optimizer_generic> funcs;
      |                                           ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:19: note: qualify call to silence this warning
  166 |       __pointer->~_Tp();
      |                   ^
7 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c test-intrapolate.cpp -o test-intrapolate.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c test-lp.cpp -o test-lp.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c test-richardson-extrapolation.cpp -o test-richardson-extrapolation.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c test-runner.cpp -o test-runner.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o psqn.so RcppExports.o r-api.o test-intrapolate.o test-lp.o test-richardson-extrapolation.o test-runner.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -fopenmp -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHXRT0S/R.INSTALL22ad95280cbd04/psqn/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHXRT0S/R.INSTALL22ad95280cbd04/psqn/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHXRT0S/R.INSTALL22ad95280cbd04/psqn/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-psqn/00new/psqn/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psqn)