• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘pseudobibeR/DESCRIPTION’ ... OK
• this is package ‘pseudobibeR’ version ‘1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pseudobibeR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/3s] ERROR Running examples in ‘pseudobibeR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: biber > ### Title: Extract Biber features from a document parsed and annotated by > ### spacyr or udpipe > ### Aliases: biber biber.spacyr_parsed biber.udpipe_connlu > > ### ** Examples > > # Parse the example documents provided with the package > biber(udpipe_samples) Error in `[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), :   attempt access index 5/5 in VECTOR_ELT Calls: biber ... as.data.frame.udpipe_connlu -> read_connlu -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/5s] ERROR   Running ‘testthat.R’ [4s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(pseudobibeR)   >   > test_check("pseudobibeR")   Saving _problems/test-features-6.R   Saving _problems/test-snapshot-13.R   Saving _problems/test-snapshot-19.R   [ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-features.R:6:1'): (code run outside of `test_that()`) ──────────   Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE)) at test-features.R:6:1    2. │ └─base::withCallingHandlers(...)    3. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)    4. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)    5. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)    6. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)    7. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)    8. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]    9. └─data.table:::`[.data.table`(...)   ── Error ('test-snapshot.R:12:3'): counts are unchanged ────────────────────────   Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:12:3     2. │ ├─testthat:::with_is_snapshotting(force(x))     3. │ └─base::force(x)     4. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE))     5. │ └─base::withCallingHandlers(...)     6. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)     7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)     8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)     9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)    10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)    11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]    12. └─data.table:::`[.data.table`(...)   ── Error ('test-snapshot.R:19:3'): normalized output is unchanged ──────────────   Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:19:3     2. │ ├─testthat:::with_is_snapshotting(force(x))     3. │ └─base::force(x)     4. ├─base::suppressMessages(biber(udp, measure = "TTR"))     5. │ └─base::withCallingHandlers(...)     6. ├─pseudobibeR::biber(udp, measure = "TTR")     7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR")     8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)     9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)    10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)    11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]    12. └─data.table:::`[.data.table`(...)      [ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs