* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘prioritizr’ ...
** this is package ‘prioritizr’ version ‘8.1.0’
** package ‘prioritizr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 21.1.8 (3+b1)’
using C++ compiler: ‘Debian clang version 21.1.8 (3+b1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQruYdT/R.INSTALL30b2dd4a1f757c/prioritizr/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c functions.cpp -o functions.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c optimization_problem.cpp -o optimization_problem.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_absolute_amount_held_by_solution.cpp -o rcpp_absolute_amount_held_by_solution.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_add_linear_constraints.cpp -o rcpp_add_linear_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_add_rij_data.cpp -o rcpp_add_rij_data.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_add_zones_constraints.cpp -o rcpp_add_zones_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_asym_connectivity_penalties.cpp -o rcpp_apply_asym_connectivity_penalties.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_boundary_penalties.cpp -o rcpp_apply_boundary_penalties.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_boundary_penalties2.cpp -o rcpp_apply_boundary_penalties2.o
In file included from rcpp_apply_boundary_penalties2.cpp:1:
In file included from ./package.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const unsigned long, std::pair<unsigned long, double>>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const unsigned long, std::pair<unsigned long, double>>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const unsigned long, std::pair<unsigned long, double>>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:712:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const unsigned long, std::pair<unsigned long, double>>>>' requested here
712 | typedef typename value_allocator_traits::pointer pointer;
| ^
rcpp_apply_boundary_penalties2.cpp:57:74: note: in instantiation of template class 'boost::unordered::unordered_multimap<unsigned long, std::pair<unsigned long, double>>' requested here
57 | boost::unordered_multimap<std::size_t, std::pair<std::size_t, double>> pu_boundary;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from rcpp_apply_boundary_penalties2.cpp:1:
In file included from ./package.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:594:26: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>>' requested here
594 | typedef typename node_allocator_traits::value_type node;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:691:35: note: in instantiation of template class 'boost::unordered::detail::node_constructor<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>>' requested here
691 | node_constructor<Alloc> a(alloc);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:853:43: note: in instantiation of function template specialization 'boost::unordered::detail::func::construct_node_from_args<std::allocator<boost::unordered::detail::node<std::pair<const unsigned long, std::pair<unsigned long, double>>, void *>>, std::pair<const unsigned long, std::pair<unsigned long, double>>>' requested here
853 | boost::unordered::detail::func::construct_node_from_args(
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:867:54: note: in instantiation of function template specialization 'boost::unordered::unordered_multimap<unsigned long, std::pair<unsigned long, double>>::emplace<std::pair<const unsigned long, std::pair<unsigned long, double>>>' requested here
867 | iterator insert(value_type&& x) { return this->emplace(std::move(x)); }
| ^
rcpp_apply_boundary_penalties2.cpp:113:25: note: in instantiation of member function 'boost::unordered::unordered_multimap<unsigned long, std::pair<unsigned long, double>>::insert' requested here
113 | pu_boundary.insert({
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
2 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_bounded_constraints.cpp -o rcpp_apply_bounded_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_connectivity_penalties.cpp -o rcpp_apply_connectivity_penalties.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_contiguity_constraints.cpp -o rcpp_apply_contiguity_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_decisions.cpp -o rcpp_apply_decisions.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_feature_contiguity_constraints.cpp -o rcpp_apply_feature_contiguity_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_linear_penalties.cpp -o rcpp_apply_linear_penalties.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_locked_constraints.cpp -o rcpp_apply_locked_constraints.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_max_cover_objective.cpp -o rcpp_apply_max_cover_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_max_features_objective.cpp -o rcpp_apply_max_features_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_max_phylo_objective.cpp -o rcpp_apply_max_phylo_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_max_utility_objective.cpp -o rcpp_apply_max_utility_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_min_largest_shortfall_objective.cpp -o rcpp_apply_min_largest_shortfall_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_min_penalties_objective.cpp -o rcpp_apply_min_penalties_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_min_set_objective.cpp -o rcpp_apply_min_set_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_min_shortfall_objective.cpp -o rcpp_apply_min_shortfall_objective.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_apply_neighbor_constraints.cpp -o rcpp_apply_neighbor_constraints.o
In file included from rcpp_apply_neighbor_constraints.cpp:1:
In file included from ./package.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<unsigned long>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<unsigned long>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<unsigned long>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:57:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<unsigned long>>' requested here
57 | typedef typename value_allocator_traits::pointer pointer;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_vector.h:2228:54: note: in instantiation of template class 'boost::unordered::unordered_set<unsigned long>' requested here
2228 | = __gnu_cxx::__numeric_traits<ptrdiff_t>::__max / sizeof(_Tp);
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_vector.h:2215:12: note: in instantiation of member function 'std::vector<boost::unordered::unordered_set<unsigned long>>::_S_max_size' requested here
2215 | if (__n > _S_max_size(_Tp_alloc_type(__a)))
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_vector.h:587:15: note: in instantiation of member function 'std::vector<boost::unordered::unordered_set<unsigned long>>::_S_check_init_len' requested here
587 | : _Base(_S_check_init_len(__n, __a), __a)
| ^
rcpp_apply_neighbor_constraints.cpp:51:50: note: in instantiation of member function 'std::vector<boost::unordered::unordered_set<unsigned long>>::vector' requested here
51 | std::vector<boost::unordered_set<std::size_t>> pu_neighbor_set(n_dv);
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from rcpp_apply_neighbor_constraints.cpp:1:
In file included from ./package.h:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<boost::unordered::detail::node<unsigned long, void *>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<boost::unordered::detail::node<unsigned long, void *>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<boost::unordered::detail::node<unsigned long, void *>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:1818:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<boost::unordered::detail::node<unsigned long, void *>>>' requested here
1818 | typedef typename node_allocator_traits::pointer node_pointer;
| ^
rcpp_apply_neighbor_constraints.cpp:90:46: note: in instantiation of template class 'boost::unordered::node_handle_set<boost::unordered::detail::node<unsigned long, void *>, unsigned long, std::allocator<unsigned long>>' requested here
90 | pu_neighbor_set[curr_i].insert(itr.col());
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
2 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_asym_connectivity.cpp -o rcpp_asym_connectivity.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_boundary.cpp -o rcpp_boundary.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_branch_matrix.cpp -o rcpp_branch_matrix.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_connectivity.cpp -o rcpp_connectivity.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_ferrier_score.cpp -o rcpp_ferrier_score.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_forbid_solution.cpp -o rcpp_forbid_solution.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_list_to_matrix_indices.cpp -o rcpp_list_to_matrix_indices.o
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o prioritizr.so RcppExports.o functions.o init.o optimization_problem.o rcpp_absolute_amount_held_by_solution.o rcpp_add_linear_constraints.o rcpp_add_rij_data.o rcpp_add_zones_constraints.o rcpp_apply_asym_connectivity_penalties.o rcpp_apply_boundary_penalties.o rcpp_apply_boundary_penalties2.o rcpp_apply_bounded_constraints.o rcpp_apply_connectivity_penalties.o rcpp_apply_contiguity_constraints.o rcpp_apply_decisions.o rcpp_apply_feature_contiguity_constraints.o rcpp_apply_linear_penalties.o rcpp_apply_locked_constraints.o rcpp_apply_max_cover_objective.o rcpp_apply_max_features_objective.o rcpp_apply_max_phylo_objective.o rcpp_apply_max_utility_objective.o rcpp_apply_min_largest_shortfall_objective.o rcpp_apply_min_penalties_objective.o rcpp_apply_min_set_objective.o rcpp_apply_min_shortfall_objective.o rcpp_apply_neighbor_constraints.o rcpp_asym_connectivity.o rcpp_boundary.o rcpp_branch_matrix.o rcpp_connectivity.o rcpp_ferrier_score.o rcpp_forbid_solution.o rcpp_list_to_matrix_indices.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQruYdT/R.INSTALL30b2dd4a1f757c/prioritizr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQruYdT/R.INSTALL30b2dd4a1f757c/prioritizr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQruYdT/R.INSTALL30b2dd4a1f757c/prioritizr/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-prioritizr/00new/prioritizr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prioritizr)