* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘pomp’ ...
** package ‘pomp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.5 (1)’
make[1]: Entering directory '/tmp/Rtmp8iOakj/R.INSTALL38dcb66710022f/pomp/src'
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bspline.c -o bspline.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dinit.c -o dinit.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distributions.c -o distributions.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dmeasure.c -o dmeasure.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprior.c -o dprior.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprocess.c -o dprocess.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c emeasure.c -o emeasure.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c euler.c -o euler.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gompertz.c -o gompertz.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logmeanexp.c -o logmeanexp.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lookup_table.c -o lookup_table.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mif2.c -o mif2.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ou2.c -o ou2.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c partrans.c -o partrans.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pfilter.c -o pfilter.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pomp_fun.c -o pomp_fun.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c probe.c -o probe.o
probe.c:18:52: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
18 | err("probe %ld returns a non-numeric result",i+1);
| ~~~ ^~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
probe.c:87:55: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
87 | err("probe %ld returns a non-numeric result.",p+1);
| ~~~ ^~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
probe.c:94:61: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
94 | err("variable-sized results returned by probe %ld.",p+1);
| ~~~ ^~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
3 warnings generated.
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c probe_acf.c -o probe_acf.o
probe_acf.c:24:46: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
24 | if (ct < 1) err("series %ld has no data",j+1);
| ~~~ ^~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
1 warning generated.
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c probe_marginal.c -o probe_marginal.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c probe_nlar.c -o probe_nlar.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c resample.c -o resample.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rinit.c -o rinit.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rmeasure.c -o rmeasure.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rprior.c -o rprior.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rprocess.c -o rprocess.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c simulate.c -o simulate.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c skeleton.c -o skeleton.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sobolseq.c -o sobolseq.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ssa.c -o ssa.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c synth_lik.c -o synth_lik.o
synth_lik.c:30:82: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
30 | err("'nsim' (=%ld) should be (much) larger than the number of probes (=%ld)",nrow,ncol); // #nocov
| ~~~ ^~~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
synth_lik.c:30:87: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
30 | err("'nsim' (=%ld) should be (much) larger than the number of probes (=%ld)",nrow,ncol); // #nocov
| ~~~ ^~~~
| %d
./pomp.h:21:39: note: expanded from macro 'err'
21 | #define err(...) errorcall(R_NilValue,__VA_ARGS__)
| ^~~~~~~~~~~
2 warnings generated.
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c trajectory.c -o trajectory.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c transformations.c -o transformations.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c userdata.c -o userdata.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vmeasure.c -o vmeasure.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wpfilter.c -o wpfilter.o
clang-17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o pomp.so bspline.o dinit.o distributions.o dmeasure.o dprior.o dprocess.o emeasure.o euler.o gompertz.o init.o logmeanexp.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o vmeasure.o wpfilter.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp8iOakj/R.INSTALL38dcb66710022f/pomp/src'
make[1]: Entering directory '/tmp/Rtmp8iOakj/R.INSTALL38dcb66710022f/pomp/src'
make[1]: Leaving directory '/tmp/Rtmp8iOakj/R.INSTALL38dcb66710022f/pomp/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-pomp/00new/pomp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pomp)