* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘pcalg’ ...
** this is package ‘pcalg’ version ‘2.7-12’
** package ‘pcalg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 21.1.8 (3)’
using C++ compiler: ‘Debian clang version 21.1.8 (3)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Z2qrb/R.INSTALL32e5fd12008a83/pcalg/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O3 -Wall -pedantic -c constraint.cpp -o constraint.o
In file included from constraint.cpp:8:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
17 | #define NDEBUG
| ^
<command line>:1:9: note: previous definition is here
1 | #define NDEBUG 1
| ^
In file included from constraint.cpp:8:
In file included from ../inst/include/pcalg/constraint.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
411 | property_ptr m_property;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS>' requested here
62 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
../inst/include/pcalg/constraint.hpp:14:16: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS>>' requested here
14 | typedef boost::graph_traits<InternalUndirectedGraph>::out_edge_iterator UndirOutEdgeIter;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
2 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O3 -Wall -pedantic -c gies.cpp -o gies.o
In file included from gies.cpp:21:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
17 | #define NDEBUG
| ^
<command line>:1:9: note: previous definition is here
1 | #define NDEBUG 1
| ^
In file included from gies.cpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
411 | property_ptr m_property;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS>' requested here
62 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
../inst/include/pcalg/constraint.hpp:14:16: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::setS, boost::vecS, boost::undirectedS>>' requested here
14 | typedef boost::graph_traits<InternalUndirectedGraph>::out_edge_iterator UndirOutEdgeIter;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
2 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O3 -Wall -pedantic -c greedy.cpp -o greedy.o
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:11:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
17 | #define NDEBUG
| ^
<command line>:1:9: note: previous definition is here
1 | #define NDEBUG 1
| ^
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
411 | property_ptr m_property;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list<boost::setS, boost::vecS, boost::bidirectionalS>' requested here
62 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
../inst/include/pcalg/greedy.hpp:57:16: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::setS, boost::vecS, boost::bidirectionalS>>' requested here
57 | typedef boost::graph_traits<InternalEssentialGraph>::vertex_descriptor vertex_t;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const std::set<unsigned int>, double>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const std::set<unsigned int>, double>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const std::set<unsigned int>, double>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:61:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const std::set<unsigned int>, double>>>' requested here
61 | typedef typename value_allocator_traits::pointer pointer;
| ^
greedy.cpp:515:48: note: in instantiation of template class 'boost::unordered::unordered_map<std::set<unsigned int>, double>' requested here
515 | boost::unordered_map<std::set<uint>, double > localScore;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
greedy.cpp:862:30: warning: unused variable 'vi' [-Wunused-variable]
862 | std::vector<uint>::iterator vi;
| ^~
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_set.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_set.hpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/set.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:594:26: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>>' requested here
594 | typedef typename node_allocator_traits::value_type node;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:721:35: note: in instantiation of template class 'boost::unordered::detail::node_constructor<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>>' requested here
721 | node_constructor<Alloc> a(alloc);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:792:18: note: in instantiation of function template specialization 'boost::unordered::detail::func::construct_node_pair<std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>, const std::set<unsigned int> &>' requested here
792 | return construct_node_pair(alloc, std::forward<Key>(k));
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:1947:40: note: in instantiation of function template specialization 'boost::unordered::detail::func::construct_node_from_key<std::set<unsigned int>, double, std::allocator<boost::unordered::detail::node<std::pair<const std::set<unsigned int>, double>, void *>>, const std::set<unsigned int> &>' requested here
1947 | node_tmp tmp(detail::func::construct_node_from_key(
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:1564:21: note: in instantiation of function template specialization 'boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<const std::set<unsigned int>, double>>, std::set<unsigned int>, double, boost::hash<std::set<unsigned int>>, std::equal_to<std::set<unsigned int>>>>::try_emplace_unique<const std::set<unsigned int> &>' requested here
1564 | return table_.try_emplace_unique(k).first->second;
| ^
greedy.cpp:579:19: note: in instantiation of member function 'boost::unordered::unordered_map<std::set<unsigned int>, double>::operator[]' requested here
579 | localScore[C_par] = diffScore;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
5 warnings generated.
clang-21 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O3 -Wall -pedantic -c score.cpp -o score.o
In file included from score.cpp:6:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
17 | #define NDEBUG
| ^
<command line>:1:9: note: previous definition is here
1 | #define NDEBUG 1
| ^
In file included from score.cpp:7:
In file included from ../inst/include/pcalg/greedy.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
63 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
411 | property_ptr m_property;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/graph_traits.hpp:62:22: note: in instantiation of template class 'boost::adjacency_list<boost::setS, boost::vecS, boost::bidirectionalS>' requested here
62 | typedef typename G::vertex_descriptor vertex_descriptor;
| ^
../inst/include/pcalg/greedy.hpp:57:16: note: in instantiation of template class 'boost::graph_traits<boost::adjacency_list<boost::setS, boost::vecS, boost::bidirectionalS>>' requested here
57 | typedef boost::graph_traits<InternalEssentialGraph>::vertex_descriptor vertex_t;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
score.cpp:170:29: warning: unused variable 'vi' [-Wunused-variable]
170 | std::vector<int>::iterator vi;
| ^~
3 warnings generated.
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o pcalg.so constraint.o gies.o greedy.o init.o score.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Z2qrb/R.INSTALL32e5fd12008a83/pcalg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Z2qrb/R.INSTALL32e5fd12008a83/pcalg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Z2qrb/R.INSTALL32e5fd12008a83/pcalg/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-pcalg/00new/pcalg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcalg)