- using R Under development (unstable) (2024-10-01 r87205)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.0 (4)
Debian flang-new version 19.1.0 (4)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘pathfindR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘pathfindR’ version ‘2.4.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pathfindR’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking whether startup messages can be suppressed ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/22s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [28s/32s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
active_snw_search 7.822 0.261 8.107
input_processing 6.867 0.198 7.656
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [98s/119s] OK
Running ‘testthat-active_snw.R’ [28s/33s]
Running ‘testthat-clustering.R’ [5s/7s]
Running ‘testthat-comparison.R’ [3s/4s]
Running ‘testthat-core.R’ [3s/4s]
Running ‘testthat-data_generation.R’ [3s/5s]
Running ‘testthat-enrichment.R’ [27s/32s]
Running ‘testthat-scoring.R’ [3s/4s]
Running ‘testthat-utility.R’ [17s/20s]
Running ‘testthat-visualization.R’ [5s/6s]
Running ‘testthat-zzz.R’ [2s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [41s/57s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK