• using R Under development (unstable) (2025-12-21 r89216)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘parameters/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘parameters’ version ‘0.28.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [3s/4s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘parameters’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking whether startup messages can be suppressed ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [95s/112s] OK
• checking Rd files ... [2s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [40s/48s] OK Examples with CPU (user + system) or elapsed time > 5s                           user system elapsed cluster_analysis 6.775 0.278 8.103 model_parameters.brmsfit 4.785 0.309 5.918
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [168s/89s] ERROR   Running ‘testthat.R’ [168s/89s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(parameters)   > library(testthat)   >   > test_check("parameters")   Starting 2 test processes.   > test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and   > test-include_reference.R: `?performance::check_singularity`).   > test-include_reference.R: Some of the confiden   > test-include_reference.R: ce intervals of the random effects parameters are   > test-include_reference.R: probably not meaningful!   > test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.   > test-include_reference.R: using the glmmTMB package.   > test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and   > test-include_reference.R: `?performance::check_singularity`).   > test-include_reference.R: Some of the confidence intervals of the random effects parameters are   > test-include_reference.R: probably not meaningful!   > test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.   > test-include_reference.R: using the glmmTMB package.   > test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk   > test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk   > test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: treatment, gender   Saving _problems/test-marginaleffects-11.R   Saving _problems/test-marginaleffects-94.R   Saving _problems/test-marginaleffects-130.R   Saving _problems/test-marginaleffects-153.R   > test-n_factors.R: [1] "# Method Agreement Procedure:"   > test-n_factors.R: [2] ""   > test-n_factors.R: [3] "The choice of 1 dimensions is supported by 11 (84.62%) methods out of 13 (Bartlett, Anderson, Lawley, Optimal coordinates, Acceleration factor, Parallel analysis, Kaiser criterion, Scree (SE), Scree (R2), VSS complexity 1, Velicer's MAP)."   > test-n_factors.R: [1] "# Method Agreement Procedure:"   > test-n_factors.R: [2] ""   > test-n_factors.R: [3] "The choice of 1 dimensions is supported by 3 (60.00%) methods out of 5 (Velicer's MAP, BIC, BIC (adjusted))."   [ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]      ══ Skipped tests (129) ═════════════════════════════════════════════════════════   • On CRAN (120): 'test-GLMMadaptive.R:1:1', 'test-Hmisc.R:1:1',     'test-averaging.R:1:1', 'test-backticks.R:1:1',     'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',     'test-brms.R:1:1', 'test-compare_parameters.R:90:5',     'test-compare_parameters.R:95:5', 'test-complete_separation.R:4:1',     'test-complete_separation.R:18:1', 'test-complete_separation.R:28:1',     'test-coxph.R:69:1', 'test-efa.R:1:1', 'test-emmGrid-df_colname.R:1:1',     'test-equivalence_test.R:3:1', 'test-equivalence_test.R:13:1',     'test-equivalence_test.R:22:3', 'test-equivalence_test.R:112:3',     'test-factor_analysis.R:2:3', 'test-factor_analysis.R:124:3',     'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1',     'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1',     'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:1:1',     'test-group_level_total.R:2:1', 'test-helper.R:1:1', 'test-ivreg.R:45:1',     'test-lcmm.R:1:1', 'test-lmerTest.R:1:1', 'test-include_reference.R:4:1',     'test-include_reference.R:62:1', 'test-include_reference.R:110:1',     'test-mipo.R:5:1', 'test-mipo.R:23:1', 'test-mmrm.R:1:1',     'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1',     'test-model_parameters.aov_es_ci.R:183:3',     'test-model_parameters.aov_es_ci.R:294:3',     'test-model_parameters.aov_es_ci.R:344:3',     'test-model_parameters.aov_es_ci.R:397:3',     'test-model_parameters.bracl.R:1:1', 'test-model_parameters.cgam.R:1:1',     'test-model_parameters.coxme.R:1:1', 'test-marginaleffects.R:170:1',     'test-marginaleffects.R:199:3', 'test-model_parameters.epi2x2.R:1:1',     'test-model_parameters.efa_cfa.R:30:3',     'test-model_parameters.fixest_multi.R:1:1',     'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',     'test-model_parameters.fixest.R:145:1', 'test-model_parameters.glmgee.R:1:1',     'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',     'test-model_parameters.mclogit.R:1:1', 'test-model_parameters.mediate.R:1:1',     'test-model_parameters.glm.R:35:1', 'test-model_parameters.glm.R:67:1',     'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',     'test-model_parameters.vgam.R:3:1', 'test-model_parameters_df.R:1:1',     'test-model_parameters_ordinal.R:1:1',     'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',     'test-model_parameters_std_mixed.R:1:1', 'test-n_factors.R:10:3',     'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',     'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',     'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:64:1', 'test-polr.R:1:1',     'test-pool_parameters.R:1:1', 'test-pool_parameters.R:32:1',     'test-posterior.R:1:1', 'test-plm.R:97:1', 'test-print_AER_labels.R:5:1',     'test-printing-stan.R:1:1', 'test-printing.R:1:1',     'test-pretty_names.R:40:1', 'test-pretty_names.R:73:5',     'test-quantreg.R:1:1', 'test-random_effects_ci-glmmTMB.R:3:1',     'test-random_effects_ci.R:1:1', 'test-robust.R:1:1', 'test-rstanarm.R:2:1',     'test-sampleSelection.R:2:1', 'test-serp.R:5:1', 'test-printing2.R:14:5',     'test-printing2.R:21:5', 'test-printing2.R:26:5', 'test-printing2.R:31:5',     'test-printing2.R:36:5', 'test-printing2.R:48:5', 'test-printing2.R:91:7',     'test-printing2.R:126:5', 'test-svylme.R:1:1', 'test-svyolr.R:1:1',     'test-visualisation_recipe.R:1:1', 'test-weightit.R:6:1',     'test-weightit.R:26:1', 'test-wrs2.R:55:1',     'test-standardize_parameters.R:28:1', 'test-standardize_parameters.R:36:3',     'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:173:3',     'test-standardize_parameters.R:297:3', 'test-standardize_parameters.R:332:3',     'test-standardize_parameters.R:425:3', 'test-standardize_parameters.R:515:3'   • On Linux (4): 'test-model_parameters.BFBayesFactor.R:1:1',     'test-nestedLogit.R:78:3', 'test-simulate_model.R:1:1',     'test-simulate_parameters.R:1:1'   • TODO: check this test locally, fails on CI, probably due to scoping issues?     (1): 'test-marginaleffects.R:280:3'   • TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'   • TODO: this one actually is not correct. (1):     'test-model_parameters_robust.R:127:3'   • empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-marginaleffects.R:7:3'): marginaleffects() ─────────────────────   Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT   Backtrace:       ▆    1. └─marginaleffects::comparisons(...)    2. ├─base::do.call("get_comparisons", args)    3. └─marginaleffects:::get_comparisons(...)    4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]    5. └─data.table:::`[.data.table`(...)   ── Error ('test-marginaleffects.R:90:3'): comparisons() ────────────────────────   Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT   Backtrace:       ▆    1. └─marginaleffects::comparisons(...)    2. ├─base::do.call("get_comparisons", args)    3. └─marginaleffects:::get_comparisons(...)    4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]    5. └─data.table:::`[.data.table`(...)   ── Error ('test-marginaleffects.R:127:3'): slopes() ────────────────────────────   Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT   Backtrace:       ▆    1. └─marginaleffects::comparisons(...)    2. ├─base::do.call("get_comparisons", args)    3. └─marginaleffects:::get_comparisons(...)    4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]    5. └─data.table:::`[.data.table`(...)   ── Error ('test-marginaleffects.R:148:3'): multiple contrasts: Issue #779 ──────   Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT   Backtrace:       ▆    1. ├─base::suppressWarnings(...) at test-marginaleffects.R:148:3    2. │ └─base::withCallingHandlers(...)    3. └─marginaleffects::comparisons(...)    4. ├─base::do.call("get_comparisons", args)    5. └─marginaleffects:::get_comparisons(...)    6. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]    7. └─data.table:::`[.data.table`(...)      [ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [14s/17s] OK
• checking HTML version of manual ... [19s/28s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR