* installing to library '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages'
* installing *source* package 'outbreaker2' ...
** package 'outbreaker2' successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/tmp/RtmpWogaim/R.INSTALL7270741c7964/outbreaker2/src'
clang++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
clang++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c internals.cpp -o internals.o
clang++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c likelihoods.cpp -o likelihoods.o
likelihoods.cpp:479:38: warning: expression result unused [-Wunused-value]
          log(1 - eps) * (double) false_neg +
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
likelihoods.cpp:475:10: warning: variable 'out' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
      if(false_pos > 0) {
         ^~~~~~~~~~~~~
likelihoods.cpp:497:12: note: uninitialized use occurs here
    return out;
           ^~~
likelihoods.cpp:475:7: note: remove the 'if' if its condition is always true
      if(false_pos > 0) {
      ^~~~~~~~~~~~~~~~~~
likelihoods.cpp:440:15: note: initialize the variable 'out' to silence this warning
    double out;
              ^
               = 0.0
2 warnings generated.
clang++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c moves.cpp -o moves.o
moves.cpp:329:10: warning: unused variable 'old_loglike' [-Wunused-variable]
  double old_loglike = 0.0, new_loglike = 0.0, p_accept = 0.0;
         ^
moves.cpp:329:29: warning: unused variable 'new_loglike' [-Wunused-variable]
  double old_loglike = 0.0, new_loglike = 0.0, p_accept = 0.0;
                            ^
moves.cpp:329:48: warning: unused variable 'p_accept' [-Wunused-variable]
  double old_loglike = 0.0, new_loglike = 0.0, p_accept = 0.0;
                                               ^
3 warnings generated.
clang++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O3 -Wall -pedantic -mtune=native -c priors.cpp -o priors.o
clang++-9 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o outbreaker2.so RcppExports.o internals.o likelihoods.o moves.o priors.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpWogaim/R.INSTALL7270741c7964/outbreaker2/src'
make[1]: Entering directory '/tmp/RtmpWogaim/R.INSTALL7270741c7964/outbreaker2/src'
make[1]: Leaving directory '/tmp/RtmpWogaim/R.INSTALL7270741c7964/outbreaker2/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-outbreaker2/00new/outbreaker2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (outbreaker2)