• using R Under development (unstable) (2023-12-02 r85657)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 17.0.5 (1)     Debian flang-new version 17.0.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘nlmixr2est/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘nlmixr2est’ version ‘2.1.8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘nlmixr2est’ can be installed ... WARNING Found the following significant warnings:   RcppExports.cpp:59:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]   rprintf.c:44:11: warning: format string is not a string literal (potentially insecure) [-Wformat-security]   rprintf.c:49:19: warning: data argument not used by format string [-Wformat-extra-args]   rprintf.c:55:11: warning: format string is not a string literal (potentially insecure) [-Wformat-security] See the install log for details.
• used C compiler: ‘Debian clang version 17.0.5 (1)’
• used C++ compiler: ‘Debian clang version 17.0.5 (1)’
• checking C++ specification ... OK   Not all R platforms support C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
• checking loading without being on the library search path ... [3s/5s] OK
• checking whether startup messages can be suppressed ... [3s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [68s/84s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?    176 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2}        | ^ checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?    176 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2}        | ^ checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?    176 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2}        | ^ checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?    176 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2}        | ^ checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?    183 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2};        | ^ checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?    183 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2};        | ^ checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?    183 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2};        | ^ checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?    183 | v_{scaled} = (v_{unscaled}-C_{1})/C_{2};        | ^ checkRd: (-1) foceiControl.Rd:191: Lost braces; missing escapes or markup?    191 | C_{1} = (max(all unscaled values)+min(all unscaled values))/2        | ^ checkRd: (-1) foceiControl.Rd:193: Lost braces; missing escapes or markup?    193 | C_{2} = (max(all unscaled values) - min(all unscaled values))/2        | ^ checkRd: (-1) foceiControl.Rd:200: Lost braces; missing escapes or markup?    200 | C_{1} = min(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:202: Lost braces; missing escapes or markup?    202 | C_{2} = max(all unscaled values) - min(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:209: Lost braces; missing escapes or markup?    209 | C_{1} = mean(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:211: Lost braces; missing escapes or markup?    211 | C_{2} = max(all unscaled values) - min(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:216: Lost braces; missing escapes or markup?    216 | C_{1} = mean(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:218: Lost braces; missing escapes or markup?    218 | C_{2} = sd(all unscaled values)        | ^ checkRd: (-1) foceiControl.Rd:224: Lost braces; missing escapes or markup?    224 | C_{1} = 0        | ^ checkRd: (-1) foceiControl.Rd:226: Lost braces; missing escapes or markup?    226 | C_{2} = sqrt(v_1^2 + v_2^2 + ... + v_n^2)        | ^ checkRd: (-1) foceiControl.Rd:231: Lost braces; missing escapes or markup?    231 | C_{1} = 0        | ^ checkRd: (-1) foceiControl.Rd:233: Lost braces; missing escapes or markup?    233 | C_{2} = 1        | ^ checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?    242 | v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?    242 | v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?    242 | v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?    257 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?    257 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?    257 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?    264 | v_{scaled} = (v_{current}-v_{init}) + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?    264 | v_{scaled} = (v_{current}-v_{init}) + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?    264 | v_{scaled} = (v_{current}-v_{init}) + scaleTo        | ^ checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?    268 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?    268 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?    268 | v_{scaled} = v_{current}/v_{init}*scaleTo        | ^ checkRd: (-1) nlmixr2Gill83.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nlmixr2Gill83.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [39s/50s] OK   Running ‘testthat.R’ [39s/50s]
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... [4s/6s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING, 1 NOTE