- using R Under development (unstable) (2025-07-15 r88411)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b1)
Debian flang-new version 19.1.7 (3+b1)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘ndtv/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ndtv’ version ‘0.13.4’
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘ndtv’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking whether startup messages can be suppressed ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/18s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [21s/28s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
render.d3movie 6.060 0.031 7.439
proximity.timeline 4.815 0.059 6.351
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [69s/91s] OK
Running ‘compute.animation_tests.R’ [4s/4s]
Running ‘d3_animation_tests.R’ [6s/8s]
Running ‘effects_tests.R’ [8s/10s]
Running ‘filmstrip_tests.R’ [4s/5s]
Running ‘layout_tests.R’ [4s/4s]
Running ‘networkAnimationTest.R’ [3s/4s]
Running ‘proximity.timeline_test.R’ [6s/8s]
Running ‘render.animation_test.R’ [9s/12s]
Running ‘timePrisimTest.R’ [3s/4s]
Running ‘timeline_test.R’ [9s/12s]
Running ‘transmissionTimelineTests.R’ [3s/4s]
Running ‘weighttest.R’ [10s/14s]
Running ‘writeFormatTests.R’ [2s/2s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [89s/103s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ndtv.Rnw’ using Sweave
Loading required package: network
‘network’ 1.19.0 (2024-12-08), part of the Statnet Project
* ‘news(package="network")’ for changes since last version
* ‘citation("network")’ for citation information
* ‘https://statnet.org’ for help, support, and other information
Loading required package: networkDynamic
‘networkDynamic’ 0.11.5 (2024-11-21), part of the Statnet Project
* ‘news(package="networkDynamic")’ for changes since last version
* ‘citation("networkDynamic")’ for citation information
* ‘https://statnet.org’ for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: ‘statnet.common’
The following objects are masked from ‘package:base’:
attr, order, replace
sna: Tools for Social Network Analysis
Version 2.8 created on 2024-09-07.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
‘ndtv’ 0.13.4 (2024-06-30), part of the Statnet Project
* ‘news(package="ndtv")’ for changes since last version
* ‘citation("ndtv")’ for citation information
* ‘https://statnet.org’ for help, support, and other information
No slice.par found, using
Calculating layout for network slice from time 1 to 2
Calculating layout for network slice from time 2 to 3
Calculating layout for network slice from time 3 to 4
Calculating layout for network slice from time 4 to 5
Calculating layout for network slice from time 5 to 6
Calculating layout for network slice from time 6 to 7
Calculating layout for network slice from time 7 to 8
Calculating layout for network slice from time 8 to 9
Calculating layout for network slice from time 9 to 10
Calculating layout for network slice from time 10 to 11
Calculating layout for network slice from time 11 to 12
Calculating layout for network slice from time 12 to 13
rendering 10 frames for slice 0
rendering 10 frames for slice 1
rendering 10 frames for slice 2
rendering 10 frames for slice 3
rendering 10 frames for slice 4
rendering 10 frames for slice 5
rendering 10 frames for slice 6
rendering 10 frames for slice 7
rendering 10 frames for slice 8
rendering 10 frames for slice 9
rendering 10 frames for slice 10
rendering 10 frames for slice 11
Loading required package: tergm
Loading required package: ergm
‘ergm’ 4.9.0 (2025-06-09), part of the Statnet Project
* ‘news(package="ergm")’ for changes since last version
* ‘citation("ergm")’ for citation information
* ‘https://statnet.org’ for help, support, and other information
‘ergm’ 4 is a major update that introduces some
backwards-incompatible changes. Please type
‘news(package="ergm")’ for a list of major changes.
Attaching package: ‘ergm’
The following object is masked from ‘package:statnet.common’:
snctrl
‘tergm’ 4.2.2 (2025-06-15), part of the Statnet Project
* ‘news(package="tergm")’ for changes since last version
* ‘citation("tergm")’ for citation information
* ‘https://statnet.org’ for help, support, and other information
Attaching package: ‘tergm’
The following object is masked from ‘package:ergm’:
snctrl
The following object is masked from ‘package:statnet.common’:
snctrl
Warning in .Deprecate_once("tergm") : 'stergm' is deprecated.
See help("Deprecated")
Starting maximum pseudolikelihood estimation (MPLE):
Obtaining the responsible dyads.
Evaluating the predictor and response matrix.
Maximizing the pseudolikelihood.
Finished MPLE.
Starting Monte Carlo maximum likelihood estimation (MCMLE):
Iteration 1 of at most 60:
Warning: ‘glpk’ selected as the solver, but package ‘Rglpk’ is not available; falling back to ‘lpSolveAPI’. This should be fine unless the sample size and/or the number of parameters is very big.
1 Optimizing with step length 1.0000.
The log-likelihood improved by 0.0145.
Convergence test p-value: < 0.0001. Converged with 99% confidence.
Finished MCMLE.
This model was fit using MCMC. To examine model
diagnostics and check for degeneracy, use the
mcmc.diagnostics() function.
======== Phase 1: Burn in, get initial gradient values, and find a configuration under which all targets vary. ========
Burning in... Done.
Attempt 1 :
All parameters have some effect and all statistics are moving. Proceeding to Phase 2.
======== Phase 2: Find and refine the estimate. ========
Subphase 2.1 /////////////////\\\\\
Subphase 2.2 \\\\\
Subphase 2.3 \\\\\
Subphase 2.4 \\\\\
======== Phase 3: Simulate from the fit and estimate standard errors. ========
Subphase 2.5 \\\\\
======== Phase 3: Simulate from the fit and estimate standard errors. ========
Error: processing vignette 'ndtv.Rnw' failed with diagnostics:
chunk 7 (label = test_model)
Error in xTAx_eigen(x, A, tol = tol, ...) : x is not in the span of A
--- failed re-building ‘ndtv.Rnw’
SUMMARY: processing the following file failed:
‘ndtv.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR