- using R Under development (unstable) (2021-10-14 r81059)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: ISO8859-15
- checking for file 'ndtv/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'ndtv' version '0.13.1'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package 'ndtv' can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/18s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [25s/27s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
render.d3movie 7.398 0.027 7.843
render.animation 5.001 0.141 5.374
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [71s/88s] ERROR
Running 'compute.animation_tests.R' [4s/4s]
Running 'd3_animation_tests.R' [7s/8s]
Running 'effects_tests.R' [9s/10s]
Running 'filmstrip_tests.R' [4s/5s]
Running 'layout_tests.R' [3s/4s]
Running 'networkAnimationTest.R' [3s/4s]
Running 'proximity.timeline_test.R' [3s/4s]
Running 'render.animation_test.R' [10s/13s]
Running 'timePrisimTest.R' [3s/4s]
Running 'timeline_test.R' [10s/12s]
Running 'transmissionTimelineTests.R' [2s/3s]
Running 'weighttest.R' [12s/16s]
Running 'writeFormatTests.R' [1s/2s]
Running the tests in 'tests/proximity.timeline_test.R' failed.
Complete output:
> # some tests tfor the proximity.timeline function
> require(ndtv)
Loading required package: ndtv
Loading required package: network
'network' 1.17.1 (2021-06-12), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: networkDynamic
'networkDynamic' 0.11.0 (2021-06-12), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: 'statnet.common'
The following objects are masked from 'package:base':
attr, order
sna: Tools for Social Network Analysis
Version 2.6 created on 2020-10-5.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
'ndtv' 0.13.1 (2021-07-29), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information
> require(testthat)
Loading required package: testthat
>
> test<-network.initialize(10)
> add.edges.active(test,head=1:9,tail=2:10,onset=0,terminus=10)
> add.edges.active(test,head=1,tail=3,onset=1,terminus=2)
> proximity.timeline(test)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
rendering splines for each vertex ...
>
> data(McFarland_cls33_10_16_96)
> proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),vertex.cex=(cls33_10_16_96%v%'type'=='instructor')*4+1,labels.at=45)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
computing positions for slice 5
computing positions for slice 6
computing positions for slice 7
computing positions for slice 8
computing positions for slice 9
computing positions for slice 10
rendering splines for each vertex ...
>
> # test algorithm types
> test_that("algorithms work",{
+ # isoMDS is default, so already tested
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='sammon')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='cmdscale')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='gvNeato')
+ # only check MDSJ if allready installed (and not on CRAN)
+ skip_on_cran()
+ has.mdsj<-ndtv:::check.mdsj(ask=FALSE)
+ if(!is.null(has.mdsj)){
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='MDSJ')
+ }
+
+ })
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Error (???): algorithms work ------------------------------------------------
Error in `install.mdsj(mdsj.dir)`: Unable to install MDSJ because the package path /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ndtv/java/does not appear to have write permissions
Backtrace:
1. ndtv:::check.mdsj(ask = FALSE)
2. ndtv:::install.mdsj(mdsj.dir)
Error: Test failed
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [285s/311s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR