- using R Under development (unstable) (2023-03-19 r84006)
- using platform: x86_64-pc-linux-gnu (64-bit)
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Debian clang version 15.0.6
GNU Fortran (Debian 12.2.0-14) 12.2.0
- running under: Debian GNU/Linux bookworm/sid
- using session charset: UTF-8
- checking for file ‘musclesyneRgies/DESCRIPTION’ ... OK
- this is package ‘musclesyneRgies’ version ‘1.2.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
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- checking for sufficient/correct file permissions ... OK
- checking whether package ‘musclesyneRgies’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/13s] OK
- checking Rd files ... [1s/1s] OK
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- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
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- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [18s/21s] ERROR
Running examples in ‘musclesyneRgies-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sMLE
> ### Title: Short-term maximum Lyapunov exponents
> ### Aliases: sMLE
>
> ### ** Examples
>
> # Load some primitives
> data("primitives")
> # Calculate sMLE of motor primitives in the muscle synergy space
> short_term_MLE <- sMLE(primitives,
+ mean_period = 80,
+ future_pts = 200,
+ norm = "z",
+ pts = 30
+ )
Error in FNN::get.knn(P[1:upper_limit, ], k = mean_period) :
DLL requires the use of native symbols
Calls: sMLE -> <Anonymous>
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [24s/26s] ERROR
Running ‘testthat.R’ [23s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(musclesyneRgies)
>
> test_check("musclesyneRgies")
[ FAIL 1 | WARN 35 | SKIP 0 | PASS 48 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-sMLE.R:4:3'): sMLE works ───────────────────────────────────────
Error in `FNN::get.knn(P[1:upper_limit, ], k = mean_period)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-sMLE.R:4:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─musclesyneRgies::sMLE(...)
5. └─FNN::get.knn(P[1:upper_limit, ], k = mean_period)
[ FAIL 1 | WARN 35 | SKIP 0 | PASS 48 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [58s/69s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs