* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘mums2’ ...
** this is package ‘mums2’ version ‘0.1.1’
** package ‘mums2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 22.1.8 (1)’
using C++ compiler: ‘Debian clang version 22.1.8 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm3evlN/R.INSTALL5af664a1b4286/mums2/src'
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AlphaDiversity.cpp -o AlphaDiversity.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Annotation.cpp -o Annotation.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AnnotationController.cpp -o AnnotationController.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c BetaDiversity.cpp -o BetaDiversity.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c BrayCurtisDissimilarity.cpp -o BrayCurtisDissimilarity.o
clang-22 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CleanSpectrum.c -o CleanSpectrum.o
CleanSpectrum.c:139:44: warning: using static function 'printf' in an inline function with external linkage is a C2y extension [-Wstatic-in-inline]
139 | if (__DEBUG__CLEAN_SPECTRUM__) printf("mz: %f, mz_delta_allowed_left: %f, mz_delta_allowed_right: %f\n", spectrum_2d[idx][0], mz_delta_allowed_left, mz_delta_allowed_right);
| ^
./ScoringMethods/SpectralEntropy/CleanSpectrum.h:65:5: note: use 'static' to give inline function 'centroid_spectrum' internal linkage
65 | int centroid_spectrum(float_spec (*spectrum_2d)[2], int peaks_length, double min_ms2_difference_in_da, double min_ms2_difference_in_ppm, int* spectrum_argsort);
| ^
| static
/usr/include/x86_64-linux-gnu/bits/stdio2.h:135:1: note: 'printf' declared here
135 | printf (__fortify_clang_overload_arg (const char *, __restrict, __fmt), ...)
| ^
CleanSpectrum.c:148:44: warning: using static function 'printf' in an inline function with external linkage is a C2y extension [-Wstatic-in-inline]
148 | if (__DEBUG__CLEAN_SPECTRUM__) printf("idx_left: %d\n", idx_left);
| ^
./ScoringMethods/SpectralEntropy/CleanSpectrum.h:65:5: note: use 'static' to give inline function 'centroid_spectrum' internal linkage
65 | int centroid_spectrum(float_spec (*spectrum_2d)[2], int peaks_length, double min_ms2_difference_in_da, double min_ms2_difference_in_ppm, int* spectrum_argsort);
| ^
| static
/usr/include/x86_64-linux-gnu/bits/stdio2.h:135:1: note: 'printf' declared here
135 | printf (__fortify_clang_overload_arg (const char *, __restrict, __fmt), ...)
| ^
CleanSpectrum.c:155:44: warning: using static function 'printf' in an inline function with external linkage is a C2y extension [-Wstatic-in-inline]
155 | if (__DEBUG__CLEAN_SPECTRUM__) printf("idx_right: %d\n", idx_right);
| ^
./ScoringMethods/SpectralEntropy/CleanSpectrum.h:65:5: note: use 'static' to give inline function 'centroid_spectrum' internal linkage
65 | int centroid_spectrum(float_spec (*spectrum_2d)[2], int peaks_length, double min_ms2_difference_in_da, double min_ms2_difference_in_ppm, int* spectrum_argsort);
| ^
| static
/usr/include/x86_64-linux-gnu/bits/stdio2.h:135:1: note: 'printf' declared here
135 | printf (__fortify_clang_overload_arg (const char *, __restrict, __fmt), ...)
| ^
CleanSpectrum.c:161:48: warning: using static function 'printf' in an inline function with external linkage is a C2y extension [-Wstatic-in-inline]
161 | if (__DEBUG__CLEAN_SPECTRUM__) printf("i: %d, mz: %f, intensity: %f\n", i, spectrum_2d[i][0], spectrum_2d[i][1]);
| ^
./ScoringMethods/SpectralEntropy/CleanSpectrum.h:65:5: note: use 'static' to give inline function 'centroid_spectrum' internal linkage
65 | int centroid_spectrum(float_spec (*spectrum_2d)[2], int peaks_length, double min_ms2_difference_in_da, double min_ms2_difference_in_ppm, int* spectrum_argsort);
| ^
| static
/usr/include/x86_64-linux-gnu/bits/stdio2.h:135:1: note: 'printf' declared here
135 | printf (__fortify_clang_overload_arg (const char *, __restrict, __fmt), ...)
| ^
4 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CommunityMatrix.cpp -o CommunityMatrix.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DecomposeMass.cpp -o DecomposeMass.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DetectNeutralLoses.cpp -o DetectNeutralLoses.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Distance.cpp -o Distance.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Diversity.cpp -o Diversity.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DiversityMetricFactory.cpp -o DiversityMetricFactory.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c FragmentationTree.cpp -o FragmentationTree.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c GreedyHeuristic.cpp -o GreedyHeuristic.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HammingDistance.cpp -o HammingDistance.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HumanMetabolomicsDB.cpp -o HumanMetabolomicsDB.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c JaccardDistance.cpp -o JaccardDistance.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ModifiedCosineScore.cpp -o ModifiedCosineScore.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MolecularFormula.cpp -o MolecularFormula.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MolecularMakeup.cpp -o MolecularMakeup.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MorisitahornIndex.cpp -o MorisitahornIndex.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rarefaction.cpp -o Rarefaction.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:29:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^
2 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ReadSpectra.cpp -o ReadSpectra.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ScoringFactory.cpp -o ScoringFactory.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ShannonDiversityIndex.cpp -o ShannonDiversityIndex.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpsonsDiversityIndex.cpp -o SimpsonsDiversityIndex.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SorensonIndex.cpp -o SorensonIndex.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SpeciesRichnessDiversity.cpp -o SpeciesRichnessDiversity.o
clang-22 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SpectralEntropy.c -o SpectralEntropy.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ThetaycDissimilarity.cpp -o ThetaycDissimilarity.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c alphabet.cpp -o alphabet.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c alphabettextparser.cpp -o alphabettextparser.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c annotateMs2Features.cpp -o annotateMs2Features.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c composedelement.cpp -o composedelement.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c denovo_molecular_formula_prediction.cpp -o denovo_molecular_formula_prediction.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distMs2.cpp -o distMs2.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distributionprobabilityscorer.cpp -o distributionprobabilityscorer.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diversityCalculations.cpp -o diversityCalculations.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c element.cpp -o element.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c entropy.cpp -o entropy.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c humanMetabolomicsDBController.cpp -o humanMetabolomicsDBController.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c isotopedistribution.cpp -o isotopedistribution.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c moleculesequenceparser.cpp -o moleculesequenceparser.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ms2ms1compare.cpp -o ms2ms1compare.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c progressBar.cpp -o progressBar.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c realmassdecomposer.cpp -o realmassdecomposer.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spectrumReaders.cpp -o spectrumReaders.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c standardmoleculesequenceparser.cpp -o standardmoleculesequenceparser.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-alpha_diversity.cpp -o test-alpha_diversity.o
test-alpha_diversity.cpp:23:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
23 | context("Test Alpha Diversity") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-alpha_diversity.cpp:23:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-alpha_diversity.cpp:29:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
29 | test_that("Calculate Simpson Diversity returns proper results") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-alpha_diversity.cpp:41:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
41 | test_that("Calculate Shannon Diversity returns proper results") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
4 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-annotation_controller.cpp -o test-annotation_controller.o
test-annotation_controller.cpp:17:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
17 | context("Test Annotation Controller") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-annotation_controller.cpp:17:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-annotation_controller.cpp:23:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
23 | test_that("The AddNode and AddNodes Function returns true") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-annotation_controller.cpp:31:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
31 | test_that("GetNode Function returns node at the proper index") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
4 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-beta_diversity.cpp -o test-beta_diversity.o
test-beta_diversity.cpp:12:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
12 | context("Test Beta Diversity") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-beta_diversity.cpp:12:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-beta_diversity.cpp:18:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
18 | test_that("Calculate Bray Curtis returns proper results") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
3 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-cpp_matrix.cpp -o test-cpp_matrix.o
test-cpp_matrix.cpp:7:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
7 | context("Test CppMatrix Operations") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:7:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:13:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
13 | test_that("You are able to add CppMatrix together") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:32:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
32 | test_that("CppMatrix Equivalence compares matrices properly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:52:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
52 | test_that("You are able to subtract CppMatrix together") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:72:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
72 | test_that("Cpp Matrix errors when you perform operations on matrices of different sizes") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp_matrix.cpp:87:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
87 | test_that("You are able to divide CppMatrix by a scaler") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
7 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-diversity_metric_function.cpp -o test-diversity_metric_function.o
test-diversity_metric_function.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
8 | context("Diversity Metrics") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-diversity_metric_function.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-diversity_metric_function.cpp:16:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
16 | test_that("Test Choose Diversity Metric Based on Name returns a non-null index") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-diversity_metric_function.cpp:33:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
33 | test_that("Test Choose Diversity Based on Index returns a non-null index") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
4 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-fragmentation_tree.cpp -o test-fragmentation_tree.o
test-fragmentation_tree.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
8 | context("Fragmentation Tree") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-fragmentation_tree.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-fragmentation_tree.cpp:16:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
16 | test_that("Fragmentation Tree initialize correctly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-fragmentation_tree.cpp:50:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
50 | test_that("Fragment Tree algorithm is computing properly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-fragmentation_tree.cpp:88:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
88 | test_that("Fragmentation tree is sorting the nodes correctly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
5 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-greedy_heuristic.cpp -o test-greedy_heuristic.o
test-greedy_heuristic.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
8 | context("Greedy Heuristic") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-greedy_heuristic.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-greedy_heuristic.cpp:16:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
16 | test_that("Greedy Heuristic returns the correct formula") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
3 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-molecular_formula.cpp -o test-molecular_formula.o
test-molecular_formula.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
8 | context("Molecular Formula") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula.cpp:8:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula.cpp:15:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
15 | test_that("Test that MolecularFormula creates the table for a given string and outputs it properly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula.cpp:25:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
25 | test_that("Get Atoms returns proper amount of atoms or 0 if not found") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula.cpp:33:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
33 | test_that("We can subtract molecular formulas and get a resultant difference") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula.cpp:52:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
52 | test_that("We can check if formulas are subformulas of another") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
6 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-molecular_formula_similarity.cpp -o test-molecular_formula_similarity.o
test-molecular_formula_similarity.cpp:9:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
9 | context("Molecular Formula Similarity") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula_similarity.cpp:9:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_formula_similarity.cpp:11:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
11 | test_that("Molecular Formula Similarity Computes Cosine Score as expected.") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
3 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-molecular_makeup.cpp -o test-molecular_makeup.o
test-molecular_makeup.cpp:9:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
9 | context("Molecular Makeup") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_makeup.cpp:9:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_makeup.cpp:11:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
11 | test_that("Get Alaphabet returns the proper element.") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-molecular_makeup.cpp:20:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
20 | test_that("GetAtomsForElement returns the proper amount of atoms per element.") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
4 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-rarefaction.cpp -o test-rarefaction.o
test-rarefaction.cpp:13:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
13 | context("Test Rarefaction") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-rarefaction.cpp:13:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-rarefaction.cpp:19:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
19 | test_that("Rarefaction will rarefy the numeric matrix properly") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
3 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-read_spectra.cpp -o test-read_spectra.o
test-read_spectra.cpp:6:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
6 | context("Test Read Spectra") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-read_spectra.cpp:6:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-read_spectra.cpp:12:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
12 | test_that("Read Spectra will fail if given a file that does not exist") {
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
3 warnings generated.
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o
clang++-22 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weights.cpp -o weights.o
clang++-22 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o mums2.so AlphaDiversity.o Annotation.o AnnotationController.o BetaDiversity.o BrayCurtisDissimilarity.o CleanSpectrum.o CommunityMatrix.o DecomposeMass.o DetectNeutralLoses.o Distance.o Diversity.o DiversityMetricFactory.o FragmentationTree.o GreedyHeuristic.o HammingDistance.o HumanMetabolomicsDB.o JaccardDistance.o ModifiedCosineScore.o MolecularFormula.o MolecularMakeup.o MorisitahornIndex.o Rarefaction.o RcppExports.o ReadSpectra.o ScoringFactory.o ShannonDiversityIndex.o SimpsonsDiversityIndex.o SorensonIndex.o SpeciesRichnessDiversity.o SpectralEntropy.o ThetaycDissimilarity.o alphabet.o alphabettextparser.o annotateMs2Features.o composedelement.o denovo_molecular_formula_prediction.o distMs2.o distributionprobabilityscorer.o diversityCalculations.o element.o entropy.o humanMetabolomicsDBController.o isotopedistribution.o moleculesequenceparser.o ms2ms1compare.o progressBar.o realmassdecomposer.o spectrumReaders.o standardmoleculesequenceparser.o test-alpha_diversity.o test-annotation_controller.o test-beta_diversity.o test-cpp_matrix.o test-diversity_metric_function.o test-fragmentation_tree.o test-greedy_heuristic.o test-molecular_formula.o test-molecular_formula_similarity.o test-molecular_makeup.o test-rarefaction.o test-read_spectra.o test-runner.o weights.o -latomic -lpthread -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm3evlN/R.INSTALL5af664a1b4286/mums2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm3evlN/R.INSTALL5af664a1b4286/mums2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm3evlN/R.INSTALL5af664a1b4286/mums2/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-mums2/00new/mums2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mums2)