• using R Under development (unstable) (2025-10-01 r88895)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b2)     Debian flang-new version 19.1.7 (3+b2)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘micsr/DESCRIPTION’ ... OK
• this is package ‘micsr’ version ‘0.1-3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘micsr’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [34s/46s] OK
• checking Rd files ... [3s/4s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [18s/22s] OK Examples with CPU (user + system) or elapsed time > 5s        user system elapsed ivldv 4.903 0.008 6.855
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [34s/46s] OK   Running ‘tinytest.R’ [34s/45s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [213s/215s] WARNING Error(s) in re-building vignettes:   ... --- re-building ‘charitable.qmd’ using pdf  [31m processing file: charitable.qmd  [39m [31moutput file: charitable.knit.md  [39m [1mpandoc [22m   to: latex   output-file: charitable.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: Estimating the Tobit-1 model with the charitable data set   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{Estimating the Tobit-1 model with the charitable data set} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [91mERROR: compilation failed- missing packages (automatic installed disabled) [39m LaTeX Error: Environment tblr undefined. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help.  ...                                                    l.335 \begin{tblr}                 [ %% tabularray outer open see charitable.log for more information.  [33mWARN: Should not have arrived here: [39m  [91mERROR: [non-error-thrown] undefined Stack trace:     at _Command.handleError (file:///opt/quarto/bin/quarto.js:10032:117)     at _Command.parseCommand (file:///opt/quarto/bin/quarto.js:9719:12)     at eventLoopTick (ext:core/01_core.js:178:7)     at async quarto (file:///opt/quarto/bin/quarto.js:175522:5)     at async file:///opt/quarto/bin/quarto.js:175550:5     at async file:///opt/quarto/bin/quarto.js:175405:14     at async mainRunner (file:///opt/quarto/bin/quarto.js:175407:5)     at async file:///opt/quarto/bin/quarto.js:175543:3 [39m Error: processing vignette 'charitable.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not evaluate cli `{}` expression: `captions`. Caused by error: ! object 'captions' not found --- failed re-building ‘charitable.qmd’ --- re-building ‘escount.qmd’ using pdf  [31m processing file: escount.qmd  [39m [31moutput file: escount.knit.md  [39m [1mpandoc [22m   to: latex   output-file: escount.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: Endogenous switching or sample selection models for count data   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{Endogenous switching or sample selection models for count data} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [1m [34mrunning lualatex - 2 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.    Output created: escount.pdf --- finished re-building ‘escount.qmd’ --- re-building ‘expreg.qmd’ using pdf  [31m processing file: expreg.qmd  [39m [31moutput file: expreg.knit.md  [39m [1mpandoc [22m   to: latex   output-file: expreg.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: Exponentional conditional mean models with endogeneity   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{Exponentional conditional mean models with endogeneity} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [1m [34mrunning lualatex - 2 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.    Output created: expreg.pdf --- finished re-building ‘expreg.qmd’ --- re-building ‘lm_function.qmd’ using pdf  [31m processing file: lm_function.qmd  [39m [31moutput file: lm_function.knit.md  [39m [1mpandoc [22m   to: latex   output-file: lm_function.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: lm function   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{lm function} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [1m [34mrunning lualatex - 2 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.    Output created: lm_function.pdf --- finished re-building ‘lm_function.qmd’ --- re-building ‘micsr_objects.qmd’ using pdf  [31m processing file: micsr_objects.qmd  [39m [31moutput file: micsr_objects.knit.md  [39m [1mpandoc [22m   to: latex   output-file: micsr_objects.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: micsr objects   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{micsr objects} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [1m [34mrunning lualatex - 2 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.    Output created: micsr_objects.pdf --- finished re-building ‘micsr_objects.qmd’ --- re-building ‘ndvuong.qmd’ using pdf  [31m processing file: ndvuong.qmd  [39m [31moutput file: ndvuong.knit.md  [39m [1mpandoc [22m   to: latex   output-file: ndvuong.tex   standalone: true   pdf-engine: lualatex   variables:     graphics: true     tables: true   default-image-extension: pdf     [1mmetadata [22m   documentclass: scrartcl   classoption:     - DIV=11     - numbers=noendperiod   papersize: letter   header-includes:     - \KOMAoption{captions}{tableheading}   block-headings: true   title: Implementation of Shi's non-degeranate Vuong test   date: today   date-format: long   bibliography:     - ../inst/REFERENCES.bib   vignette: |     %\VignetteIndexEntry{Implementation of Shi's non-degeranate Vuong test} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}     [1m [34m Rendering PDF [39m [22m  [1m [34mrunning lualatex - 1 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.     [1m [34mrunning lualatex - 2 [39m [22m   This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)    restricted system commands enabled.    Output created: ndvuong.pdf --- finished re-building ‘ndvuong.qmd’ SUMMARY: processing the following file failed:   ‘charitable.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [8s/11s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING