- using R Under development (unstable) (2025-10-10 r88914)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (7)
Debian flang-new version 19.1.7 (7)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘micsr/DESCRIPTION’ ... OK
- this is package ‘micsr’ version ‘0.1-3’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘micsr’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘Debian clang version 19.1.7 (7)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [34s/42s] OK
- checking Rd files ... [3s/4s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [18s/22s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ivldv 4.983 0.001 5.97
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [35s/43s] OK
Running ‘tinytest.R’ [34s/43s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [213s/215s] WARNING
Error(s) in re-building vignettes:
...
--- re-building ‘charitable.qmd’ using pdf
[31m
processing file: charitable.qmd
[39m [31moutput file: charitable.knit.md
[39m [1mpandoc [22m
to: latex
output-file: charitable.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: Estimating the Tobit-1 model with the charitable data set
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{Estimating the Tobit-1 model with the charitable data set} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[91mERROR:
compilation failed- missing packages (automatic installed disabled) [39m
LaTeX Error: Environment tblr undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.335 \begin{tblr}
[ %% tabularray outer open
see charitable.log for more information.
[33mWARN: Error encountered when rendering files [39m
Error: processing vignette 'charitable.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error:
! Could not evaluate cli `{}` expression: `captions`.
Caused by error:
! object 'captions' not found
--- failed re-building ‘charitable.qmd’
--- re-building ‘escount.qmd’ using pdf
[31m
processing file: escount.qmd
[39m [31moutput file: escount.knit.md
[39m [1mpandoc [22m
to: latex
output-file: escount.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: Endogenous switching or sample selection models for count data
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{Endogenous switching or sample selection models for count data} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[1m [34mrunning lualatex - 2 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
Output created: escount.pdf
--- finished re-building ‘escount.qmd’
--- re-building ‘expreg.qmd’ using pdf
[31m
processing file: expreg.qmd
[39m [31moutput file: expreg.knit.md
[39m [1mpandoc [22m
to: latex
output-file: expreg.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: Exponentional conditional mean models with endogeneity
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{Exponentional conditional mean models with endogeneity} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[1m [34mrunning lualatex - 2 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
Output created: expreg.pdf
--- finished re-building ‘expreg.qmd’
--- re-building ‘lm_function.qmd’ using pdf
[31m
processing file: lm_function.qmd
[39m [31moutput file: lm_function.knit.md
[39m [1mpandoc [22m
to: latex
output-file: lm_function.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: lm function
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{lm function} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[1m [34mrunning lualatex - 2 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
Output created: lm_function.pdf
--- finished re-building ‘lm_function.qmd’
--- re-building ‘micsr_objects.qmd’ using pdf
[31m
processing file: micsr_objects.qmd
[39m [31moutput file: micsr_objects.knit.md
[39m [1mpandoc [22m
to: latex
output-file: micsr_objects.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: micsr objects
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{micsr objects} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[1m [34mrunning lualatex - 2 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
Output created: micsr_objects.pdf
--- finished re-building ‘micsr_objects.qmd’
--- re-building ‘ndvuong.qmd’ using pdf
[31m
processing file: ndvuong.qmd
[39m [31moutput file: ndvuong.knit.md
[39m [1mpandoc [22m
to: latex
output-file: ndvuong.tex
standalone: true
pdf-engine: lualatex
variables:
graphics: true
tables: true
default-image-extension: pdf
[1mmetadata [22m
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- \KOMAoption{captions}{tableheading}
block-headings: true
title: Implementation of Shi's non-degeranate Vuong test
date: today
date-format: long
bibliography:
- ../inst/REFERENCES.bib
vignette: |
%\VignetteIndexEntry{Implementation of Shi's non-degeranate Vuong test} %\VignetteEngine{quarto::pdf} %\VignetteEncoding{UTF-8}
[1m [34m
Rendering PDF [39m [22m
[1m [34mrunning lualatex - 1 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
[1m [34mrunning lualatex - 2 [39m [22m
This is LuaHBTeX, Version 1.22.0 (TeX Live 2025/Debian)
restricted system commands enabled.
Output created: ndvuong.pdf
--- finished re-building ‘ndvuong.qmd’
SUMMARY: processing the following file failed:
‘charitable.qmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [8s/11s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 WARNING