- using R Under development (unstable) (2024-10-09 r87215)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.1 (1)
Debian flang-new version 19.1.1 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘mice/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘mice’ version ‘3.16.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘mice’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘Debian clang version 19.1.1 (1)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/5s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [41s/51s] OK
- checking Rd files ... [2s/3s] NOTE
checkRd: (-1) ampute.Rd:143: Lost braces
143 | we refer to \doi{10.1177/0049124118799376}{Schouten and Vink, 2018}.
| ^
checkRd: (-1) ampute.Rd:188: Lost braces
188 | \doi{10.1080/00949655.2018.1491577}{Schouten, Lugtig and Vink, 2018}.
| ^
checkRd: (-1) ampute.Rd:223: Lost braces
223 | Schouten, R.M. and Vink, G. (2018){The Dance of the Mechanisms: How Observed Information Influences the Validity of Missingness Assumptions}.
| ^
checkRd: (-1) mice.Rd:348: Lost braces; missing escapes or markup?
348 | The \pkg{mice} software was published in the {Journal of Statistical Software} (Van Buuren and Groothuis-Oudshoorn, 2011). \doi{10.18637/jss.v045.i03}
| ^
checkRd: (-1) mice.impute.pmm.Rd:87: Lost braces; missing escapes or markup?
87 | \item{Construct \eqn{n_0} sets \eqn{Z_j}, each containing \eqn{d} candidate donors, from Y_{obs} such that \eqn{\sum_d\dot\eta(i,j)} is minimum for all \eqn{j=1,\dots,n_0}. Break ties randomly.}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bwplot.mads.Rd: Lattice
bwplot.mids.Rd: lattice
densityplot.mids.Rd: lattice
mice.impute.cart.Rd: rpart.control
plot.mids.Rd: panel.xyplot
stripplot.mids.Rd: lattice
xyplot.mads.Rd: lattice, Lattice
xyplot.mids.Rd: lattice
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [37s/47s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [60s/104s] OK
Running ‘testthat.R’ [60s/103s]
- checking PDF version of manual ... [14s/20s] OK
- checking HTML version of manual ... [10s/17s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs