* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘meshed’ ...
** package ‘meshed’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
using C++11
make[1]: Entering directory '/tmp/RtmphTLZpC/R.INSTALL67e858271120/meshed/src'
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c covariance_lmc.cpp -o covariance_lmc.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c matern.cpp -o matern.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c mcmc_hmc_nodes.cpp -o mcmc_hmc_nodes.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c mesh_dep.cpp -o mesh_dep.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed.cpp -o meshed.o
In file included from meshed.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_beta_sampler.cpp -o meshed_beta_sampler.o
In file included from meshed_beta_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_betalambdatau_sampler.cpp -o meshed_betalambdatau_sampler.o
In file included from meshed_betalambdatau_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_casc.cpp -o meshed_casc.o
In file included from meshed_casc.cpp:6:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
meshed_casc.cpp:72:7: warning: unused variable 'd' [-Wunused-variable]
72 | int d = coords.n_cols;
| ^
meshed_casc.cpp:92:8: warning: variable 'acceptable' set but not used [-Wunused-but-set-variable]
92 | bool acceptable=true;
| ^
4 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_lambda_sampler.cpp -o meshed_lambda_sampler.o
In file included from meshed_lambda_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_mcmc.cpp -o meshed_mcmc.o
In file included from meshed_mcmc.cpp:6:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
meshed_mcmc.cpp:172:8: warning: variable 'acceptable' set but not used [-Wunused-but-set-variable]
172 | bool acceptable = false;
| ^
3 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_predict.cpp -o meshed_predict.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_prior_sample.cpp -o meshed_prior_sample.o
In file included from meshed_prior_sample.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_tausq_sampler.cpp -o meshed_tausq_sampler.o
In file included from meshed_tausq_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
meshed_tausq_sampler.cpp:69:77: warning: '/*' within block comment [-Wcomment]
69 | arma::accu(alter_data.loglik_w_comps) + arma::accu(alter_data.ll_y); //***
| ^
meshed_tausq_sampler.cpp:71:77: warning: '/*' within block comment [-Wcomment]
71 | arma::accu(param_data.loglik_w_comps) + arma::accu(param_data.ll_y); //***
| ^
4 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_theta_sampler.cpp -o meshed_theta_sampler.o
In file included from meshed_theta_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_w_prior_sampler.cpp -o meshed_w_prior_sampler.o
In file included from meshed_w_prior_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
2 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_w_sampler.cpp -o meshed_w_sampler.o
In file included from meshed_w_sampler.cpp:1:
In file included from ./meshed.h:14:
./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable]
597 | std::chrono::steady_clock::time_point t0;
| ^~
./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable]
598 | std::chrono::steady_clock::time_point t1;
| ^~
meshed_w_sampler.cpp:310:14: warning: unused variable 'do_gibbs' [-Wunused-variable]
310 | bool do_gibbs = arma::all(familyid == 0);
| ^~~~~~~~
meshed_w_sampler.cpp:215:7: warning: variable 'mala_timer' set but not used [-Wunused-but-set-variable]
215 | int mala_timer = 0;
| ^
4 warnings generated.
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c postprocess.cpp -o postprocess.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_caching.cpp -o utils_caching.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_check_groups.cpp -o utils_check_groups.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_find_nan.cpp -o utils_find_nan.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_irls.cpp -o utils_irls.o
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o meshed.so RcppExports.o covariance_lmc.o matern.o mcmc_hmc_nodes.o mesh_dep.o meshed.o meshed_beta_sampler.o meshed_betalambdatau_sampler.o meshed_casc.o meshed_lambda_sampler.o meshed_mcmc.o meshed_predict.o meshed_prior_sample.o meshed_tausq_sampler.o meshed_theta_sampler.o meshed_w_prior_sampler.o meshed_w_sampler.o postprocess.o utils_caching.o utils_check_groups.o utils_find_nan.o utils_irls.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmphTLZpC/R.INSTALL67e858271120/meshed/src'
make[1]: Entering directory '/tmp/RtmphTLZpC/R.INSTALL67e858271120/meshed/src'
make[1]: Leaving directory '/tmp/RtmphTLZpC/R.INSTALL67e858271120/meshed/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-meshed/00new/meshed/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘meshed’ as ‘meshed_0.2.3_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (meshed)