* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/medicalcoder.Rcheck’
* using R Under development (unstable) (2025-10-15 r88920)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘medicalcoder/DESCRIPTION’ ... OK
* this is package ‘medicalcoder’ version ‘0.6.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [1s/2s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘medicalcoder’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/medicalcoder-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
* checking whether the package can be unloaded cleanly ... [3s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
* checking loading without being on the library search path ... [3s/4s] OK
* checking whether startup messages can be suppressed ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/28s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/33s] OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
is_icd        7.430  0.111   9.208
comorbidities 6.218  0.100   8.569
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [285s/347s] OK
  Running ‘test-asserts.R’ [4s/4s]
  Running ‘test-charlson-codes.R’ [3s/4s]
  Running ‘test-charlson-index-scores.R’ [3s/4s]
  Running ‘test-charlson.R’ [25s/30s]
  Running ‘test-comorbidities.R’ [4s/5s]
  Running ‘test-elixhauser-codes.R’ [4s/5s]
  Running ‘test-elixhauser-example.R’ [4s/5s]
  Running ‘test-elixhauser-index-scores.R’ [4s/4s]
  Running ‘test-elixhauser-poa.R’ [4s/4s]
  Running ‘test-elixhauser.R’ [4s/4s]
  Running ‘test-get_icd.R’ [27s/30s]
  Running ‘test-icd-codes.R’ [4s/5s]
  Running ‘test-icd_compact_to_full.R’ [4s/5s]
  Running ‘test-is_icd.R’ [28s/37s]
  Running ‘test-locked-bindings.R’ [8s/12s]
  Running ‘test-longitudinal-comorbidities.R’ [5s/6s]
  Running ‘test-longitudinal-pccc-v3.1.R’ [4s/5s]
  Running ‘test-lookup_icd_codes.R’ [14s/18s]
  Running ‘test-pccc-codes.R’ [6s/7s]
  Running ‘test-pccc-conditions.R’ [3s/4s]
  Running ‘test-pccc-deltas.R’ [16s/19s]
  Running ‘test-pccc.R’ [22s/27s]
  Running ‘test-summary.R’ [10s/12s]
  Running ‘test-tibble-datatable.R’ [65s/77s]
  Running ‘test-vs-pccc_1.0.6.R’ [8s/9s]
  Running ‘test-zero-row-inputs.R’ [4s/5s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [106s/147s] OK
* checking PDF version of manual ... [6s/9s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK