* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘lolog’ ...
** this is package ‘lolog’ version ‘1.3.2’
** package ‘lolog’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.8 (3)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphuYGue/R.INSTALL38a66045652678/lolog/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppModule.cpp -o RcppModule.o
In file included from RcppModule.cpp:6:
In file included from ../inst/include/LatentOrderLikelihood.h:4:
In file included from ../inst/include/Model.h:6:
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
58 | pS = statMapPtr->at(name);
| ^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getStat' requested here
371 | AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
| ^
RcppModule.cpp:81:48: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addStatistic' requested here
81 | .method("addStatistic",&Model<Undirected>::addStatistic)
| ^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
35 | static StatMapPtr statMapPtr;
| ^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::statMapPtr' is explicitly instantiated in another translation unit
58 | pS = statMapPtr->at(name);
| ^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
74 | pS = offsetMapPtr->at(name);
| ^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getOffset' requested here
384 | AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
| ^
RcppModule.cpp:82:45: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addOffset' requested here
82 | .method("addOffset",&Model<Undirected>::addOffset)
| ^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
36 | static OffsetMapPtr offsetMapPtr;
| ^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::offsetMapPtr' is explicitly instantiated in another translation unit
74 | pS = offsetMapPtr->at(name);
| ^
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
58 | pS = statMapPtr->at(name);
| ^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getStat' requested here
371 | AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
| ^
RcppModule.cpp:98:46: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addStatistic' requested here
98 | .method("addStatistic",&Model<Directed>::addStatistic)
| ^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
35 | static StatMapPtr statMapPtr;
| ^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::statMapPtr' is explicitly instantiated in another translation unit
58 | pS = statMapPtr->at(name);
| ^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
74 | pS = offsetMapPtr->at(name);
| ^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getOffset' requested here
384 | AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
| ^
RcppModule.cpp:99:43: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addOffset' requested here
99 | .method("addOffset",&Model<Directed>::addOffset)
| ^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
36 | static OffsetMapPtr offsetMapPtr;
| ^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::offsetMapPtr' is explicitly instantiated in another translation unit
74 | pS = offsetMapPtr->at(name);
| ^
4 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c StatController.cpp -o StatController.o
In file included from StatController.cpp:3:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
1187 | double toDeg;
| ^~~~~
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
1188 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
1199 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
2464 | double netSize = actorIndex + 1.0;
| ^~~~~~~
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
2465 | double totDegree = (net.nEdges() - hasEdge) * 2.0;
| ^~~~~~~~~
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
2471 | double sdegs = 0.0;
| ^~~~~
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
2805 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
In file included from StatController.cpp:3:
In file included from ../inst/include/Stats.h:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_map.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/map.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:61:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
61 | typedef typename value_allocator_traits::pointer pointer;
| ^
../inst/include/Stats.h:2906:64: note: in instantiation of template class 'boost::unordered::unordered_map<std::pair<int, int>, double>' requested here
2906 | boost::unordered::unordered_map<std::pair<int, int>, double> map;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from StatController.cpp:3:
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
2990 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
In file included from StatController.cpp:3:
In file included from ../inst/include/Stats.h:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_map.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/map.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<boost::unordered::detail::node<std::pair<const std::pair<int, int>, double>, void *>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<boost::unordered::detail::node<std::pair<const std::pair<int, int>, double>, void *>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const std::pair<int, int>, double>, void *>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:594:26: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<boost::unordered::detail::node<std::pair<const std::pair<int, int>, double>, void *>>>' requested here
594 | typedef typename node_allocator_traits::value_type node;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:721:35: note: in instantiation of template class 'boost::unordered::detail::node_constructor<std::allocator<boost::unordered::detail::node<std::pair<const std::pair<int, int>, double>, void *>>>' requested here
721 | node_constructor<Alloc> a(alloc);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:792:18: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
792 | return construct_node_pair(alloc, std::forward<Key>(k));
| ^
../inst/include/Stat.h:171:31: note: in instantiation of member function 'lolog::EdgeCovSparse<lolog::Directed>::EdgeCovSparse' requested here
171 | Stat(Rcpp::List params) : stat(params){}
| ^
../inst/include/Stat.h:187:20: note: in instantiation of member function 'lolog::Stat<lolog::Directed, lolog::EdgeCovSparse<lolog::Directed>>::Stat' requested here
187 | return new Stat(params);
| ^
../inst/include/Stat.h:183:16: note: in instantiation of member function 'lolog::Stat<lolog::Directed, lolog::EdgeCovSparse<lolog::Directed>>::createUnsafe' requested here
183 | return createUnsafe(params);
| ^
../inst/include/Stat.h:169:5: note: in instantiation of member function 'lolog::Stat<lolog::Directed, lolog::EdgeCovSparse<lolog::Directed>>::vCreateUnsafe' requested here
169 | Stat() : stat(){}
| ^
StatController.cpp:47:40: note: in instantiation of member function 'lolog::Stat<lolog::Directed, lolog::EdgeCovSparse<lolog::Directed>>::Stat' requested here
47 | registerStatistic( DirStatPtr( new DirectedEdgeCovSparse() ) );
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from StatController.cpp:3:
../inst/include/Stats.h:2472:26: warning: unused variable 'fit' [-Wunused-variable]
2472 | NeighborIterator fit = net.begin(order[actorIndex]);
| ^~~
../inst/include/Stat.h:247:14: note: in instantiation of member function 'lolog::SharedNbrs<lolog::Undirected>::dyadUpdate' requested here
247 | stat.dyadUpdate(net,from,to,order,actorIndex);
| ^
../inst/include/Stat.h:243:9: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::dyadUpdate' requested here
243 | dyadUpdate(net,from,to,order,actorIndex);
| ^
../inst/include/Stat.h:169:5: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::vDyadUpdate' requested here
169 | Stat() : stat(){}
| ^
StatController.cpp:87:42: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::Stat' requested here
87 | registerStatistic( UndirStatPtr( new UndirectedSharedNbrs() ) );
| ^
In file included from StatController.cpp:3:
../inst/include/Stats.h:2473:26: warning: unused variable 'fend' [-Wunused-variable]
2473 | NeighborIterator fend = net.end(order[actorIndex]);
| ^~~~
12 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c main.cpp -o main.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_BinaryNet.cpp -o test_BinaryNet.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_Constraints.cpp -o test_Constraints.o
In file included from test_Constraints.cpp:7:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
1187 | double toDeg;
| ^~~~~
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
1188 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
1199 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
2464 | double netSize = actorIndex + 1.0;
| ^~~~~~~
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
2465 | double totDegree = (net.nEdges() - hasEdge) * 2.0;
| ^~~~~~~~~
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
2471 | double sdegs = 0.0;
| ^~~~~
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
2805 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
In file included from test_Constraints.cpp:7:
In file included from ../inst/include/Stats.h:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_map.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/map.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:61:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
61 | typedef typename value_allocator_traits::pointer pointer;
| ^
../inst/include/Stats.h:2906:64: note: in instantiation of template class 'boost::unordered::unordered_map<std::pair<int, int>, double>' requested here
2906 | boost::unordered::unordered_map<std::pair<int, int>, double> map;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from test_Constraints.cpp:7:
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
2990 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
9 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_LatentOrderLikelhood.cpp -o test_LatentOrderLikelhood.o
In file included from test_LatentOrderLikelhood.cpp:5:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
1187 | double toDeg;
| ^~~~~
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
1188 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
1199 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
2464 | double netSize = actorIndex + 1.0;
| ^~~~~~~
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
2465 | double totDegree = (net.nEdges() - hasEdge) * 2.0;
| ^~~~~~~~~
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
2471 | double sdegs = 0.0;
| ^~~~~
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
2805 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
In file included from test_LatentOrderLikelhood.cpp:5:
In file included from ../inst/include/Stats.h:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_map.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/map.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:61:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
61 | typedef typename value_allocator_traits::pointer pointer;
| ^
../inst/include/Stats.h:2906:64: note: in instantiation of template class 'boost::unordered::unordered_map<std::pair<int, int>, double>' requested here
2906 | boost::unordered::unordered_map<std::pair<int, int>, double> map;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from test_LatentOrderLikelhood.cpp:5:
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
2990 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
test_LatentOrderLikelhood.cpp:108:12: warning: unused variable 'llik' [-Wunused-variable]
108 | double llik = model.logLik();
| ^~~~
10 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_ParamParser.cpp -o test_ParamParser.o
test_ParamParser.cpp:10:5: warning: unused label 'Rcpp' [-Wunused-label]
10 | Rcpp:List params = Rcpp::List::create(1, Rcpp::Named("a")=2, Rcpp::Named("b") = "ss");
| ^~~~~
1 warning generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_Stats.cpp -o test_Stats.o
In file included from test_Stats.cpp:4:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
1187 | double toDeg;
| ^~~~~
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
1188 | double fromDeg;
| ^~~~~~~
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
1199 | double deg = net.degree(from);
| ^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
2464 | double netSize = actorIndex + 1.0;
| ^~~~~~~
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
2465 | double totDegree = (net.nEdges() - hasEdge) * 2.0;
| ^~~~~~~~~
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
2471 | double sdegs = 0.0;
| ^~~~~
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
2805 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
In file included from test_Stats.cpp:4:
In file included from ../inst/include/Stats.h:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered_map.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/map.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/allocator_constructed.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:11:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:361:25: warning: 'is_always_equal' is deprecated: use 'std::allocator_traits::is_always_equal' instead [-Wdeprecated-declarations]
361 | typedef typename A::is_always_equal type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_access.hpp:368:30: note: in instantiation of template class 'boost::detail::alloc_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
368 | typedef typename detail::alloc_equal<A>::type type;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/allocator_traits.hpp:42:22: note: in instantiation of template class 'boost::allocator_is_always_equal<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
42 | typedef typename allocator_is_always_equal<A>::type is_always_equal;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/detail/implementation.hpp:472:33: note: in instantiation of template class 'boost::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
472 | struct allocator_traits : boost::allocator_traits<Alloc>
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/unordered/unordered_map.hpp:61:24: note: in instantiation of template class 'boost::unordered::detail::allocator_traits<std::allocator<std::pair<const std::pair<int, int>, double>>>' requested here
61 | typedef typename value_allocator_traits::pointer pointer;
| ^
../inst/include/Stats.h:2906:64: note: in instantiation of template class 'boost::unordered::unordered_map<std::pair<int, int>, double>' requested here
2906 | boost::unordered::unordered_map<std::pair<int, int>, double> map;
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/allocator.h:159:2: note: 'is_always_equal' has been explicitly marked deprecated here
159 | _GLIBCXX20_DEPRECATED_SUGGEST("std::allocator_traits::is_always_equal")
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:144:45: note: expanded from macro '_GLIBCXX20_DEPRECATED_SUGGEST'
144 | # define _GLIBCXX20_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
In file included from test_Stats.cpp:4:
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
2990 | bool addingEdge = !net.hasEdge(from,to);
| ^~~~~~~~~~
9 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tests.cpp -o tests.o
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o lolog.so RcppExports.o RcppModule.o StatController.o main.o test_BinaryNet.o test_Constraints.o test_LatentOrderLikelhood.o test_ParamParser.o test_Stats.o tests.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphuYGue/R.INSTALL38a66045652678/lolog/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphuYGue/R.INSTALL38a66045652678/lolog/src'
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphuYGue/R.INSTALL38a66045652678/lolog/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-lolog/00new/lolog/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘[’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lolog)