* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘localScore’ ... ** this is package ‘localScore’ version ‘2.0.3’ ** package ‘localScore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqNBhpy/R.INSTALL7ca7d6a101ca7/localScore/src' clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c function_wrapper.cpp -o function_wrapper.o function_wrapper.cpp:175:8: warning: unused variable 'checkOK' [-Wunused-variable] 175 | bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ; | ^~~~~~~ function_wrapper.cpp:239:5: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 239 | double p = calcul_karlin(local_score, as<std::vector<double>>(score_probabilities), as<int>(sequence_max_), -as<int>(sequence_min_), (long)sequence_length); | ^ function_wrapper.cpp:236:3: note: previous statement is here 236 | if(esp>=0.0) | ^ function_wrapper.cpp:228:8: warning: unused variable 'checkOK' [-Wunused-variable] 228 | bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ; | ^~~~~~~ function_wrapper.cpp:262:8: warning: unused variable 'checkOK' [-Wunused-variable] 262 | bool checkOK = checkKDMparameters(1, 1, score_probabilities, sequence_min_, sequence_max_, score_values_) ; | ^~~~~~~ function_wrapper.cpp:328:8: warning: unused variable 'checkOK' [-Wunused-variable] 328 | bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ; | ^~~~~~~ function_wrapper.cpp:389:6: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 389 | double p = calcul_probMaxPartialSum(k, as<std::vector<double>>(score_probabilities), max_score, -min_score); | ^ function_wrapper.cpp:386:3: note: previous statement is here 386 | if(k<0) | ^ function_wrapper.cpp:376:8: warning: unused variable 'checkOK' [-Wunused-variable] 376 | bool checkOK = checkKDMparameters(1, 1, score_probabilities, sequence_min_, sequence_max_, score_values_) ; | ^~~~~~~ 7 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c localScoreC.cpp -o localScoreC.o localScoreC.cpp:93:7: warning: unused variable 'fixNoScoreMatrixSize' [-Wunused-variable] 93 | int fixNoScoreMatrixSize = (numberOfLocalScores==0) ? 1 : 0; // needed to create finalScores Matrix in case of no localScore found | ^~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c pValueMethods.cpp -o pValueMethods.o pValueMethods.cpp:512:16: warning: unused variable 'i' [-Wunused-variable] 512 | unsigned int i ; | ^ pValueMethods.cpp:629:10: warning: unused variable 'K_plus' [-Wunused-variable] 629 | double K_plus = karlin_parameters[1] ; | ^~~~~~ pValueMethods.cpp:713:10: warning: unused variable 'R' [-Wunused-variable] 713 | double R = roots_separated.mod_smaller_one[0].real(); | ^ 3 warnings generated. clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o localScore.so RcppExports.o function_wrapper.o localScoreC.o pValueMethods.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqNBhpy/R.INSTALL7ca7d6a101ca7/localScore/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqNBhpy/R.INSTALL7ca7d6a101ca7/localScore/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqNBhpy/R.INSTALL7ca7d6a101ca7/localScore/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-localScore/00new/localScore/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (localScore)