* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘lefko3’ ...
** this is package ‘lefko3’ version ‘6.7.2’
** package ‘lefko3’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.8 (3)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeQzG9T/R.INSTALL226eb4b623bb6/lefko3/src'
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c DataManagement.cpp -o DataManagement.o
In file included from DataManagement.cpp:5:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
DataManagement.cpp:5778:8: warning: variable 'rename_bool' set but not used [-Wunused-but-set-variable]
 5778 |   bool rename_bool {false};
      |        ^
4 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c ErrorChecks.cpp -o ErrorChecks.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c ExtraFunctions.cpp -o ExtraFunctions.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c Mats2.cpp -o Mats2.o
In file included from Mats2.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
3 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c MatsNProj.cpp -o MatsNProj.o
In file included from MatsNProj.cpp:7:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
3 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c ModelSelection.cpp -o ModelSelection.o
In file included from ModelSelection.cpp:2:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
3 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c PopChar.cpp -o PopChar.o
In file included from PopChar.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
3 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c PopDyn2.cpp -o PopDyn2.o
In file included from PopDyn2.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
 1478 |     int age_related_stages {0};
      |         ^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
 1479 |     int age_related_min_ages {0};
      |         ^
3 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeQzG9T/R.INSTALL226eb4b623bb6/lefko3/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeQzG9T/R.INSTALL226eb4b623bb6/lefko3/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeQzG9T/R.INSTALL226eb4b623bb6/lefko3/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-lefko3/00new/lefko3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lefko3)