- using R Under development (unstable) (2024-10-30 r87277)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.2 (1)
Debian flang-new version 19.1.2 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘itsdm/DESCRIPTION’ ... OK
- this is package ‘itsdm’ version ‘0.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘itsdm’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [12s/14s] OK
- checking whether the package can be loaded with stated dependencies ... [13s/16s] OK
- checking whether the package can be unloaded cleanly ... [12s/14s] OK
- checking whether the namespace can be loaded with stated dependencies ... [13s/16s] OK
- checking whether the namespace can be unloaded cleanly ... [13s/17s] OK
- checking loading without being on the library search path ... [13s/17s] OK
- checking whether startup messages can be suppressed ... [13s/16s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [64s/82s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
cmcc_bioclim.Rd: sf, sfc
detect_envi_change.Rd: st_as_stars, read_stars, explain, geom_smooth
dim_reduce.Rd: sf, sfc
future_cmcc_bioclim.Rd: sf, sfc
future_worldclim2.Rd: sf, sfc
independent_response.Rd: st_as_stars, read_stars
isotree_po.Rd: isolation.forest, sf
mainland_africa.Rd: sf, sfc
marginal_response.Rd: st_as_stars, read_stars
plot.EnvironmentalOutlier.Rd: geom_sf
plot.ShapDependence.Rd: geom_smooth
shap_dependence.Rd: st_as_stars, read_stars, explain
shap_spatial_response.Rd: st_as_stars, read_stars, explain
spatial_response.Rd: st_as_stars, read_stars, explain
suspicious_env_outliers.Rd: outlier.tree, crs, sf
variable_analysis.Rd: st_as_stars, read_stars, explain
variable_contrib.Rd: explain
worldclim2.Rd: sf, sfc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [48s/72s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
dim_reduce 13.471 0.084 17.442
detect_envi_change 3.460 0.071 6.172
evaluate_po 3.447 0.035 7.328
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [4s/5s] OK
- checking PDF version of manual ... [7s/12s] OK
- checking HTML version of manual ... [3s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE