• using R Under development (unstable) (2025-06-17 r88325)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3)     Debian flang-new version 19.1.7 (3)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘huge/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘huge’ version ‘1.3.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Haoming",                       family = "Jiang",                       role = c("aut", "cre"),                       email = "jianghm.ustc@gmail.com"),                person(given = "Xinyu",                       family = "Fei",                       role = "aut"),                person(given = "Han",                       family = "Liu",                       role = "aut"),                person(given = "Kathryn",                       family = "Roeder",                       role = "aut"),                person(given = "John",                       family = "Lafferty",                       role = "aut"),                person(given = "Larry",                       family = "Wasserman",                       role = "aut"),                person(given = "Xingguo",                       family = "Li",                       role = "aut"),                person(given = "Tuo",                       family = "Zhao",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘huge’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.7 (3)’
• checking C++ specification ... NOTE   Specified C++11: please drop specification unless essential
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/21s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?     31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?     31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.Rd:37: Lost braces; missing escapes or markup?     37 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}        | ^ checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?     26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?     26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?     28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?     28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}        | ^ checkRd: (-1) huge.mb.Rd:34: Lost braces; missing escapes or markup?     34 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}        | ^ checkRd: (-1) huge.tiger.Rd:25: Lost braces; missing escapes or markup?     25 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [35s/46s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed huge.inference 8.540 0.102 11.001 huge.generator 5.743 0.217 7.539 huge 4.364 0.000 5.589 huge.select 3.897 0.001 6.359
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/11s] OK   Running ‘test.R’ [12s/11s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s/4s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 NOTEs