- using R Under development (unstable) (2025-06-17 r88325)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3)
Debian flang-new version 19.1.7 (3)
- running under: Debian GNU/Linux 13 (trixie)
- using session charset: UTF-8
- checking for file ‘huge/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘huge’ version ‘1.3.5’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] NOTE
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Haoming",
family = "Jiang",
role = c("aut", "cre"),
email = "jianghm.ustc@gmail.com"),
person(given = "Xinyu",
family = "Fei",
role = "aut"),
person(given = "Han",
family = "Liu",
role = "aut"),
person(given = "Kathryn",
family = "Roeder",
role = "aut"),
person(given = "John",
family = "Lafferty",
role = "aut"),
person(given = "Larry",
family = "Wasserman",
role = "aut"),
person(given = "Xingguo",
family = "Li",
role = "aut"),
person(given = "Tuo",
family = "Zhao",
role = "aut"))
as necessary.
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘huge’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘Debian clang version 19.1.7 (3)’
- checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/21s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?
31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?
31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.Rd:37: Lost braces; missing escapes or markup?
37 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
| ^
checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?
26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?
26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?
28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?
28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
| ^
checkRd: (-1) huge.mb.Rd:34: Lost braces; missing escapes or markup?
34 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
| ^
checkRd: (-1) huge.tiger.Rd:25: Lost braces; missing escapes or markup?
25 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [35s/46s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
huge.inference 8.540 0.102 11.001
huge.generator 5.743 0.217 7.539
huge 4.364 0.000 5.589
huge.select 3.897 0.001 6.359
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [12s/11s] OK
Running ‘test.R’ [12s/11s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [3s/4s] OK
- checking PDF version of manual ... [6s/7s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 3 NOTEs