• using R Under development (unstable) (2024-09-11 r87117)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 18.1.8 (9)     Debian flang-new version 18.1.8 (9)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘hdcuremodels/DESCRIPTION’ ... OK
• this is package ‘hdcuremodels’ version ‘0.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘hdcuremodels’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [33s/44s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   cure_estimate.Rd: survfit   nonzerocure_test.Rd: survfit   sufficient_fu_test.Rd: survfit Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [90s/126s] OK Examples with CPU (user + system) or elapsed time > 5s                       user system elapsed cv_curegmifs 13.187 0.018 18.399 cv_cureem 12.324 0.048 17.354 coef.mixturecure 7.326 0.061 10.024 plot.mixturecure 7.278 0.056 10.475 print.mixturecure 7.254 0.027 10.055 AUC 7.143 0.104 9.051 summary.mixturecure 7.174 0.001 9.803 predict.mixturecure 7.043 0.008 10.717 curegmifs 7.011 0.028 9.349 concordance_mcm 6.959 0.063 10.155
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [23s/33s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE