* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘glmmrOptim’ ...
** this is package ‘glmmrOptim’ version ‘0.5.1’
** package ‘glmmrOptim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Debian clang version 23.1.0 (2)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiDLwlc/R.INSTALL238a7c6f20a50f/glmmrOptim/src'
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rminqa/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Cholesky:32:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Eigenvalues:39:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:55:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:56:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:66:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
17 warnings generated.
clang++-23 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rminqa/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c gd_search.cpp -o gd_search.o
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:21:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
21 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formula.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formulaparse.h:12:11: warning: unused variable 'a' [-Wunused-variable]
12 | float a = std::stod(s);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formulaparse.h:235:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
235 | bool add_check, variable_in_data;
| ^
gd_search.cpp:243:9: warning: unused variable 'curr_size' [-Wunused-variable]
243 | int curr_size = FirstOrderDerivatives.size();
| ^~~~~~~~~
gd_search.cpp:1198:23: warning: unused variable 'idx' [-Wunused-variable]
1198 | for (const auto& idx : groups[k]) { /* gather */ }
| ^~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:47:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Covariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Covariance>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Cholesky:32:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:55:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:56:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:66:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/covariance.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/maths.h:6:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
21 warnings generated.
clang++-23 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o glmmrOptim.so RcppExports.o gd_search.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-23/lib/clang/23/lib/linux -L/usr/lib/llvm-23/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiDLwlc/R.INSTALL238a7c6f20a50f/glmmrOptim/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiDLwlc/R.INSTALL238a7c6f20a50f/glmmrOptim/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiDLwlc/R.INSTALL238a7c6f20a50f/glmmrOptim/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-glmmrOptim/00new/glmmrOptim/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmrOptim)