* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘gllvm’ ...
** package ‘gllvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
make[1]: Entering directory '/tmp/RtmpST6EiX/R.INSTALL1dfcda3264cd8b/gllvm/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gllvm.cpp -o gllvm.o
In file included from gllvm.cpp:2:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gllvm.cpp:2:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tmb_core.hpp:1277:6: note: in instantiation of member function 'objective_function<TMBad::global::ad_aug>::operator()' requested here
1277 | F(); // Run through user template (modifies reportvector)
| ^
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tmb_core.hpp:2031:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
2031 | PROTECT( res = asSEXP( pf->operator()() ) );
| ^
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:1815:23: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1815 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:1815:23: note: remove extraneous parentheses around the comparison to silence this warning
1815 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:1815:23: note: use '=' to turn this equality comparison into an assignment
1815 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:1819:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1819 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:1819:30: note: remove extraneous parentheses around the comparison to silence this warning
1819 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:1819:30: note: use '=' to turn this equality comparison into an assignment
1819 | } else if((y(i,j)==1)){
| ^~
| =
8 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o gllvm.so gllvm.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpST6EiX/R.INSTALL1dfcda3264cd8b/gllvm/src'
make[1]: Entering directory '/tmp/RtmpST6EiX/R.INSTALL1dfcda3264cd8b/gllvm/src'
make[1]: Leaving directory '/tmp/RtmpST6EiX/R.INSTALL1dfcda3264cd8b/gllvm/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-gllvm/00new/gllvm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gllvm)