* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘gllvm’ ...
** this is package ‘gllvm’ version ‘2.0.15’
** package ‘gllvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 23.1.1 (2)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYbo5GC/R.INSTALL31cb454042c236/gllvm/src'
clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c gllvm.cpp -o gllvm.o
In file included from gllvm.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gllvm.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
gllvm.cpp:4066:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4066 | if((y(i,j)==0)){
| ~~~~~~^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/tmb_core.hpp:2045:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
2045 | PROTECT( res = asSEXP( pf->operator()() ) );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/include/Rinternals.h:357:31: note: expanded from macro 'PROTECT'
357 | #define PROTECT(s) Rf_protect(s)
| ^
gllvm.cpp:4066:27: note: remove extraneous parentheses around the comparison to silence this warning
4066 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:4066:27: note: use '=' to turn this equality comparison into an assignment
4066 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:4072:34: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4072 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:4072:34: note: remove extraneous parentheses around the comparison to silence this warning
4072 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:4072:34: note: use '=' to turn this equality comparison into an assignment
4072 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:4129:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4129 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:4129:25: note: remove extraneous parentheses around the comparison to silence this warning
4129 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:4129:25: note: use '=' to turn this equality comparison into an assignment
4129 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:4132:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4132 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:4132:32: note: remove extraneous parentheses around the comparison to silence this warning
4132 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:4132:32: note: use '=' to turn this equality comparison into an assignment
4132 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:4219:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4219 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:4219:25: note: remove extraneous parentheses around the comparison to silence this warning
4219 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:4219:25: note: use '=' to turn this equality comparison into an assignment
4219 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:4228:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4228 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:4228:32: note: remove extraneous parentheses around the comparison to silence this warning
4228 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:4228:32: note: use '=' to turn this equality comparison into an assignment
4228 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:4295:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4295 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:4295:27: note: remove extraneous parentheses around the comparison to silence this warning
4295 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:4295:27: note: use '=' to turn this equality comparison into an assignment
4295 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:4299:34: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4299 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:4299:34: note: remove extraneous parentheses around the comparison to silence this warning
4299 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:4299:34: note: use '=' to turn this equality comparison into an assignment
4299 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:5481:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
5481 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:5481:25: note: remove extraneous parentheses around the comparison to silence this warning
5481 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:5481:25: note: use '=' to turn this equality comparison into an assignment
5481 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:5485:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
5485 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:5485:32: note: remove extraneous parentheses around the comparison to silence this warning
5485 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:5485:32: note: use '=' to turn this equality comparison into an assignment
5485 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:5514:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
5514 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:5514:25: note: remove extraneous parentheses around the comparison to silence this warning
5514 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:5514:25: note: use '=' to turn this equality comparison into an assignment
5514 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:5517:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
5517 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:5517:32: note: remove extraneous parentheses around the comparison to silence this warning
5517 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:5517:32: note: use '=' to turn this equality comparison into an assignment
5517 | } else if((y(i,j)==1)){
| ^~
| =
15 warnings generated.
clang++-23 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o gllvm.so gllvm.o -fopenmp -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYbo5GC/R.INSTALL31cb454042c236/gllvm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYbo5GC/R.INSTALL31cb454042c236/gllvm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYbo5GC/R.INSTALL31cb454042c236/gllvm/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-gllvm/00new/gllvm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gllvm)