* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘2.1.1’
** package ‘gkwreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1oebQ7/R.INSTALL21c5e7315649d6/gkwreg/src'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o gkwreg.so RcppExports.o gkwreg-predict-resid.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1oebQ7/R.INSTALL21c5e7315649d6/gkwreg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1oebQ7/R.INSTALL21c5e7315649d6/gkwreg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1oebQ7/R.INSTALL21c5e7315649d6/gkwreg/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-gkwreg/00new/gkwreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.cpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.cpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.cpp:206:16: warning: unused variable 'useMeanCache' [-Wunused-variable]
206 | DATA_INTEGER(useMeanCache); // Ignored - removed caching overhead
| ^~~~~~~~~~~~
/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.cpp:208:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
208 | DATA_INTEGER(userChunkSize); // Ignored - removed complexity
| ^~~~~~~~~~~~~
5 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.so /home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509/gkwbetareg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwbetareg_compile_20251124151509'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.cpp:13:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.cpp:13:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.cpp:314:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
314 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617/bkwreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/bkwreg_compile_20251124151617'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.cpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.cpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.cpp:318:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
318 | DATA_INTEGER(userChunkSize);
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722/ekwreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/ekwreg_compile_20251124151722'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.cpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.cpp:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.cpp:345:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
345 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828/gkwreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/gkwreg_compile_20251124151828'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.cpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.cpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.cpp:315:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
315 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936/kkwreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kkwreg_compile_20251124151936'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.cpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.cpp:20:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.cpp:290:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
290 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022/kwreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/kwreg_compile_20251124152022'
Note: Using Makevars in /home/hornik/.R/Makevars-clang
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103'
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.cpp -o /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.o
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.cpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.cpp:19:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/scratch/Rtmp1oebQ7/RLIBS_21c5e753213de7/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.cpp:262:16: warning: unused variable 'userChunkSize' [-Wunused-variable]
262 | DATA_INTEGER(userChunkSize); // Restored (but not used in simple loop)
| ^~~~~~~~~~~~~
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.so /home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103/mcreg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyKR1n/mcreg_compile_20251124152103'
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)