- using R Under development (unstable) (2025-10-03 r88899)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (7)
Debian flang-new version 19.1.7 (7)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘ggpubr/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ggpubr’ version ‘0.6.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [3s/4s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘ggpubr’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [32s/45s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [205s/237s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggbarplot 9.224 0.012 10.644
ggviolin 7.988 0.043 9.196
ggline 7.880 0.004 8.679
ggtexttable 7.804 0.064 8.608
ggsummarystats 7.334 0.008 9.890
ggboxplot 6.470 0.055 7.342
stat_anova_test 6.250 0.004 6.723
ggpar 6.232 0.004 6.996
ggscatterhist 5.806 0.004 6.352
ggmaplot 5.751 0.052 6.819
stat_compare_means 5.509 0.012 6.179
ggstripchart 5.455 0.008 5.928
ggscatter 5.295 0.067 6.284
geom_pwc 5.137 0.004 5.755
ggadjust_pvalue 4.833 0.044 5.949
ggballoonplot 4.600 0.019 5.464
stat_kruskal_test 4.330 0.004 5.661
geom_bracket 4.285 0.001 5.341
diff_express 4.093 0.122 5.544
ggerrorplot 4.209 0.000 5.039
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [38s/56s] ERROR
Running ‘testthat.R’ [38s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [15s/21s] OK
- checking HTML version of manual ... [8s/13s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR