- using R Under development (unstable) (2025-08-27 r88724)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b2)
Debian flang-new version 19.1.7 (3+b2)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘gggenomes/DESCRIPTION’ ... OK
- this is package ‘gggenomes’ version ‘1.0.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gggenomes’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘aaa.R’ ‘flip.R’ ‘geom_link.Rd’ ‘geom_seq.Rd’ ‘geom_seq_break.Rd’
‘shift.Rd’ ‘track_info.Rd’
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/26s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [118s/148s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
focus 10.484 0.171 13.434
add_tracks 9.910 0.311 13.473
gggenomes 9.803 0.139 12.851
geom_gene 7.643 0.087 9.244
read_alitv 7.138 0.019 9.073
pick 6.712 0.103 8.275
flip 6.700 0.114 7.707
geom_link 6.569 0.114 8.644
scale_x_bp 5.285 0.087 6.918
geom_wiggle 4.855 0.036 6.071
geom_bin_label 4.617 0.143 6.016
position_strand 4.494 0.056 5.187
shift 4.446 0.078 5.765
geom_seq 4.138 0.011 5.578
geom_seq_break 3.868 0.051 5.171
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/4s] OK
Running ‘testthat.R’ [3s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [52s/70s] OK
- checking PDF version of manual ... [10s/14s] OK
- checking HTML version of manual ... [4s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE