- using R Under development (unstable) (2024-11-27 r87386)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.3 (2)
Debian flang-new version 19.1.3 (2)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘fsbrain/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘fsbrain’ version ‘0.5.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘fsbrain’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [36s/44s] OK
- checking Rd files ... [2s/3s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
brainview.sd.Rd: bg3d, par3d
brainview.si.Rd: bg3d, par3d
brainview.sr.Rd: bg3d, spin3d, par3d
brainview.t4.Rd: bg3d, par3d
brainview.t9.Rd: bg3d, par3d
brainviews.Rd: par3d
collayer.from.mask.data.Rd: makecmap
collayer.from.morphlike.data.Rd: makecmap
coloredmesh.from.annot.Rd: tmesh3d
coloredmesh.from.color.Rd: tmesh3d
coloredmesh.from.label.Rd: makecmap, tmesh3d
coloredmesh.from.mask.Rd: makecmap, tmesh3d
coloredmesh.from.morph.native.Rd: makecmap, tmesh3d
coloredmesh.from.morph.standard.Rd: makecmap, tmesh3d
coloredmesh.from.morphdata.Rd: makecmap, tmesh3d
coloredmesh.from.preloaded.data.Rd: makecmap
coloredmeshes.from.color.Rd: tmesh3d
common.makecmap.range.Rd: makecmap
cube3D.tris.Rd: triangles3d
draw.colorbar.Rd: bgplot3d
fs.coloredmesh.Rd: tmesh3d
get.rglstyle.Rd: material3d, shade3d
get.rglstyle.default.Rd: material3d, shade3d
get.rglstyle.edges.Rd: shade3d
get.rglstyle.glass.Rd: material3d, shade3d
get.rglstyle.glass2.Rd: material3d, shade3d
get.rglstyle.parameters.Rd: material3d
get.rglstyle.semitransparent.Rd: material3d, shade3d
get.rglstyle.shiny.Rd: material3d, shade3d
highlight.vertices.on.subject.Rd: par3d
rglactions.Rd: text3d
rglvoxels.Rd: spheres3d, triangles3d
vis.color.on.subject.Rd: par3d
vis.coloredmeshes.Rd: par3d
vis.coloredmeshes.rotating.Rd: spin3d, par3d
vis.data.on.fsaverage.Rd: par3d, makecmap
vis.data.on.subject.Rd: par3d, makecmap
vis.fs.surface.Rd: makecmap
vis.labeldata.on.subject.Rd: par3d, makecmap
vis.mask.on.subject.Rd: par3d, makecmap
vis.region.values.on.subject.Rd: par3d, makecmap
vis.rotated.coloredmeshes.Rd: rotate3d
vis.subject.annot.Rd: par3d
vis.subject.label.Rd: par3d, makecmap
vis.subject.morph.native.Rd: par3d, makecmap
vis.subject.morph.standard.Rd: par3d, makecmap
vis.subject.pre.Rd: par3d, makecmap
vis.symmetric.data.on.subject.Rd: par3d, makecmap
vislayout.from.coloredmeshes.Rd: par3d, material3d
volvis.voxels.Rd: triangles3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/11s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
group.data.to.array 3.556 0.622 6.088
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [23s/69s] OK
Running ‘testthat_au.R’ [17s/56s]
Running ‘testthat_vz.R’ [6s/13s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/13s] OK
- checking PDF version of manual ... [17s/22s] OK
- checking HTML version of manual ... [10s/19s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE