- using R Under development (unstable) (2025-12-18 r89199)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 21.1.7 (1)
Debian flang version 21.1.7 (1)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘formulaic/DESCRIPTION’ ... OK
- this is package ‘formulaic’ version ‘0.0.8’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘formulaic’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/6s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] ERROR
Running examples in ‘formulaic-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create.formula
> ### Title: Create Formula
> ### Aliases: create.formula
>
> ### ** Examples
>
> n <- 10
> dd <- data.table::data.table(w = rnorm(n= n), x = rnorm(n = n), pixel_1 = rnorm(n = n))
> dd[, pixel_2 := 0.3 * pixel_1 + rnorm(n)]
> dd[, y := 5 * x + 3 * pixel_1 + 2 * pixel_2 + rnorm(n)]
>
> create.formula(outcome.name = "y", input.names = "x", input.patterns = c("pi", "xel"), dat = dd)
Error in `[.data.table`(inclusion.table, exclude.null.quantity == F, `:=`(class, :
attempt access index 2/2 in VECTOR_ELT
Calls: create.formula -> [ -> [.data.table
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [2s/2s] ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> testthat::test_check("formulaic")
Loading required package: formulaic
Saving _problems/test-create_formula-51.R
Saving _problems/test-reduce-formula-10.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-create_formula.R:46:1'): (code run outside of `test_that()`) ───
Error in ``[.data.table`(inclusion.table, exclude.null.quantity == F, `:=`(class, dat[, class(eval(parse(text = add.backtick(x = variable, dat = dat))))]), by = variable)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─formulaic::create.formula(...) at test-create_formula.R:46:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-reduce-formula.R:6:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(inclusion.table, exclude.null.quantity == F, `:=`(class, dat[, class(eval(parse(text = add.backtick(x = variable, dat = dat))))]), by = variable)`: attempt access index 2/2 in VECTOR_ELT
Backtrace:
▆
1. └─formulaic::reduce.existing.formula(...) at test-reduce-formula.R:6:1
2. └─formulaic::create.formula(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [2s/2s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Introduction-to-formulaic.Rmd’ using rmarkdown
Quitting from Introduction-to-formulaic.Rmd:87-99 [example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 2/2 in VECTOR_ELT
---
Backtrace:
▆
1. └─formulaic::create.formula(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction-to-formulaic.Rmd' failed with diagnostics:
attempt access index 2/2 in VECTOR_ELT
--- failed re-building ‘Introduction-to-formulaic.Rmd’
SUMMARY: processing the following file failed:
‘Introduction-to-formulaic.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/5s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 3 ERRORs