• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘eventPred/DESCRIPTION’ ... OK
• this is package ‘eventPred’ version ‘0.2.9’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘eventPred’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/7s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [4s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/7s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/7s] OK
• checking loading without being on the library search path ... [5s/7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [40s/57s] OK
• checking Rd files ... [1s/1s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/10s] ERROR Running examples in ‘eventPred-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: getPrediction > ### Title: Enrollment and event prediction > ### Aliases: getPrediction > > ### ** Examples > > # Event prediction after enrollment completion > set.seed(3000) > > pred <- getPrediction( + df = interimData2, to_predict = "event only", + target_d = 200, + event_model = "weibull", + dropout_model = "exponential", + pilevel = 0.90, nreps = 100) Error in `[.data.table`(newEvents[get("event") == 1], do.call("order", :   attempt access index 7/7 in VECTOR_ELT Calls: getPrediction -> predictEvent -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [28s/22s] ERROR   Running ‘testthat.R’ [28s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(eventPred)   >   > test_check("eventPred")   Saving _problems/test-getPrediction-30.R   Saving _problems/test-getPrediction-51.R   Saving _problems/test-getPrediction-69.R   Saving _problems/test-predictEvent-33.R   Saving _problems/test-predictEvent-74.R   Saving _problems/test-predictEvent-102.R   [ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-getPrediction.R:21:3'): event prediction at design stage ───────   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::getPrediction(...) at test-getPrediction.R:21:3    2. └─eventPred::predictEvent(...)    3. ├─...[]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-getPrediction.R:42:3'): event prediction during enrollment phase ──   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::getPrediction(...) at test-getPrediction.R:42:3    2. └─eventPred::predictEvent(...)    3. ├─...[]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-getPrediction.R:63:3'): event prediction after enrollment completion ──   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::getPrediction(...) at test-getPrediction.R:63:3    2. └─eventPred::predictEvent(...)    3. ├─...[]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-predictEvent.R:27:3'): event prediction at design stage ────────   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::predictEvent(...) at test-predictEvent.R:27:3    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test-predictEvent.R:68:3'): event prediction during enrollment stage ──   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::predictEvent(...) at test-predictEvent.R:68:3    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test-predictEvent.R:97:3'): event prediction after enrollment completion ──   Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─eventPred::predictEvent(...) at test-predictEvent.R:97:3    2. ├─...[]    3. └─data.table:::`[.data.table`(...)      [ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [76s/73s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘event_prediction_after_enrollment_completion.Rmd’ using rmarkdown Quitting from event_prediction_after_enrollment_completion.Rmd:28-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 7/7 in VECTOR_ELT --- Backtrace:     ▆  1. └─eventPred::getPrediction(...)  2. └─eventPred::predictEvent(...)  3. ├─...[]  4. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'event_prediction_after_enrollment_completion.Rmd' failed with diagnostics: attempt access index 7/7 in VECTOR_ELT --- failed re-building ‘event_prediction_after_enrollment_completion.Rmd’ --- re-building ‘event_prediction_at_the_design_stage.Rmd’ using rmarkdown Quitting from event_prediction_at_the_design_stage.Rmd:69-83 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 9/9 in VECTOR_ELT --- Backtrace:     ▆  1. └─eventPred::getPrediction(...)  2. └─eventPred::predictEvent(...)  3. ├─...[]  4. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'event_prediction_at_the_design_stage.Rmd' failed with diagnostics: attempt access index 9/9 in VECTOR_ELT --- failed re-building ‘event_prediction_at_the_design_stage.Rmd’ --- re-building ‘event_prediction_before_enrollment_completion.Rmd’ using rmarkdown Quitting from event_prediction_before_enrollment_completion.Rmd:27-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 7/7 in VECTOR_ELT --- Backtrace:     ▆  1. └─eventPred::getPrediction(...)  2. └─eventPred::predictEvent(...)  3. ├─...[]  4. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'event_prediction_before_enrollment_completion.Rmd' failed with diagnostics: attempt access index 7/7 in VECTOR_ELT --- failed re-building ‘event_prediction_before_enrollment_completion.Rmd’ --- re-building ‘event_prediction_incorporating_covariates.Rmd’ using rmarkdown Quitting from event_prediction_incorporating_covariates.Rmd:28-45 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 7/7 in VECTOR_ELT --- Backtrace:     ▆  1. └─eventPred::getPrediction(...)  2. └─eventPred::predictEvent(...)  3. ├─...[]  4. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'event_prediction_incorporating_covariates.Rmd' failed with diagnostics: attempt access index 7/7 in VECTOR_ELT --- failed re-building ‘event_prediction_incorporating_covariates.Rmd’ --- re-building ‘event_prediction_incorporating_prior_information.Rmd’ using rmarkdown Quitting from event_prediction_incorporating_prior_information.Rmd:27-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 7/7 in VECTOR_ELT --- Backtrace:     ▆  1. └─eventPred::getPrediction(...)  2. └─eventPred::predictEvent(...)  3. ├─...[]  4. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'event_prediction_incorporating_prior_information.Rmd' failed with diagnostics: attempt access index 7/7 in VECTOR_ELT --- failed re-building ‘event_prediction_incorporating_prior_information.Rmd’ SUMMARY: processing the following files failed:   ‘event_prediction_after_enrollment_completion.Rmd’   ‘event_prediction_at_the_design_stage.Rmd’   ‘event_prediction_before_enrollment_completion.Rmd’   ‘event_prediction_incorporating_covariates.Rmd’   ‘event_prediction_incorporating_prior_information.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs