• using R Under development (unstable) (2025-08-10 r88559)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (3+b1)     Debian flang-new version 19.1.7 (3+b1)
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘emmeans/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘emmeans’ version ‘1.11.2’
• package encoding: UTF-8
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• checking whether package ‘emmeans’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
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• checking examples ... [12s/17s] ERROR Running examples in ‘emmeans-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: emmip > ### Title: Interaction-style plots for estimated marginal means > ### Aliases: emmip emmip.default emmip_ggplot emmip_lattice > > ### ** Examples > > #--- Three-factor example > noise.lm = lm(noise ~ size * type * side, data = auto.noise) > > # Separate interaction plots of size by type, for each side > emmip(noise.lm, type ~ size | side) > > # One interaction plot, using combinations of size and side as the x factor > # ... with added confidence intervals and some formatting changes > emmip(noise.lm, type ~ side * size, CIs = TRUE, + CIarg = list(lwd = 1, alpha = 1, color = "cyan"), + dotarg = list(color = "black")) > > # Create a black-and-white version of above with different linetypes > # (Let the linetypes and symbols default to the palette) > emmip(noise.lm, type ~ side * size, CIs = TRUE, col = "black", + linearg = list(), dotarg = list(size = 2), CIarg = list(alpha = 1)) + + ggplot2::theme_bw() > > # One interaction plot using combinations of type and side as the trace factor > emmip(noise.lm, type * side ~ size) > > # Individual traces in panels > emmip(noise.lm, ~ size | type * side) > > # Example for the 'style' argument > fib.lm = lm(strength ~ machine * sqrt(diameter), data = fiber) > fib.rg = ref_grid(fib.lm, at = list(diameter = c(3.5, 4, 4.5, 5, 5.5, 6)^2)) > emmip(fib.rg, machine ~ diameter) # curves (because diameter is numeric) > emmip(fib.rg, machine ~ diameter, style = "factor") # points and lines > > # For an example using extra ggplot2 code, see 'vignette("messy-data")', > # in the section on nested models. > > ### Options with transformations or link functions > neuralgia.glm <- glm(Pain ~ Treatment * Sex + Age, family = binomial(), + data = neuralgia) > > # On link scale: > emmip(neuralgia.glm, Treatment ~ Sex) > > # On response scale: > emmip(neuralgia.glm, Treatment ~ Sex, type = "response") > > # With transformed axis scale and custom scale divisions > emmip(neuralgia.glm, Treatment ~ Sex, type = "scale", + breaks = seq(0.10, 0.90, by = 0.10)) Failed with error: ‘unused argument (quiet = TRUE)’ Error in .make.scale(emmo@misc) :   type = "scale" requires the 'scales' package to be installed Calls: emmip -> emmip.default -> .make.scale Execution halted
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• checking re-building of vignette outputs ... [113s/152s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘AQuickStart.Rmd’ using rmarkdown --- finished re-building ‘AQuickStart.Rmd’ --- re-building ‘FAQs.Rmd’ using rmarkdown --- finished re-building ‘FAQs.Rmd’ --- re-building ‘basics.Rmd’ using rmarkdown --- finished re-building ‘basics.Rmd’ --- re-building ‘comparisons.Rmd’ using rmarkdown --- finished re-building ‘comparisons.Rmd’ --- re-building ‘confidence-intervals.Rmd’ using rmarkdown --- finished re-building ‘confidence-intervals.Rmd’ --- re-building ‘interactions.Rmd’ using rmarkdown --- finished re-building ‘interactions.Rmd’ --- re-building ‘messy-data.Rmd’ using rmarkdown --- finished re-building ‘messy-data.Rmd’ --- re-building ‘models.Rmd’ using rmarkdown --- finished re-building ‘models.Rmd’ --- re-building ‘predictions.Rmd’ using rmarkdown --- finished re-building ‘predictions.Rmd’ --- re-building ‘re-engineering-clds.rmd’ using rmarkdown --- finished re-building ‘re-engineering-clds.rmd’ --- re-building ‘sophisticated.Rmd’ using rmarkdown --- finished re-building ‘sophisticated.Rmd’ --- re-building ‘transformations.Rmd’ using rmarkdown Failed with error: 'unused argument (quiet = TRUE)' Quitting from transformations.Rmd:255-257 [unnamed-chunk-14] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.make.scale()`: ! type = "scale" requires the 'scales' package to be installed --- Backtrace:     ▆  1. ├─base::plot(neur.Trt.emm, type = "scale")  2. └─emmeans:::plot.emmGrid(neur.Trt.emm, type = "scale")  3. └─emmeans:::.make.scale(object@misc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'transformations.Rmd' failed with diagnostics: type = "scale" requires the 'scales' package to be installed --- failed re-building ‘transformations.Rmd’ --- re-building ‘utilities.Rmd’ using rmarkdown --- finished re-building ‘utilities.Rmd’ --- re-building ‘vignette-topics.Rmd’ using rmarkdown [WARNING] Div at vignette-topics.knit.md line 10 column 1 unclosed at vignette-topics.knit.md line 804 column 1, closing implicitly. --- finished re-building ‘vignette-topics.Rmd’ --- re-building ‘xplanations.Rmd’ using rmarkdown --- finished re-building ‘xplanations.Rmd’ --- re-building ‘xtending.Rmd’ using rmarkdown --- finished re-building ‘xtending.Rmd’ SUMMARY: processing the following file failed:   ‘transformations.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [9s/13s] OK
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• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs