- using R Under development (unstable) (2025-09-03 r88788)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b2)
Debian flang-new version 19.1.7 (3+b2)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘effects/DESCRIPTION’ ... OK
- this is package ‘effects’ version ‘4.2-4’
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘effects’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
- checking loading without being on the library search path ... [3s/3s] OK
- checking whether startup messages can be suppressed ... [3s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [29s/34s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [12s/16s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
effect 4.727 0.094 6.391
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10s/12s] OK
Running ‘effect-tests-1.R’ [3s/4s]
Running ‘effect-tests-2.R’ [6s/8s]
Running ‘regression-tests.R’ [0s/0s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [45s/61s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘functions-supported-by-effects.Rnw’ using knitr
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
--- finished re-building ‘functions-supported-by-effects.Rnw’
--- re-building ‘partial-residuals.Rnw’ using knitr
--- finished re-building ‘partial-residuals.Rnw’
--- re-building ‘predictor-effects-gallery.Rnw’ using knitr
Quitting from predictor-effects-gallery.Rnw:964-970 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ll()`:
! could not find function "ll"
---
Backtrace:
x
1. +-car::S(or1)
2. \-car:::S.polr(or1)
3. \-car:::fitstats(object)
4. +-stats::AIC(model)
5. \-stats:::AIC.default(model)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predictor-effects-gallery.Rnw' failed with diagnostics:
could not find function "ll"
--- failed re-building ‘predictor-effects-gallery.Rnw’
SUMMARY: processing the following file failed:
‘predictor-effects-gallery.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/10s] OK
- checking HTML version of manual ... [2s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR