- using R Under development (unstable) (2025-09-10 r88809)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (3+b2)
Debian flang-new version 19.1.7 (3+b2)
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘dabestr/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘dabestr’ version ‘2025.3.14’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘dabestr’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [19s/25s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [6s/8s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [70s/88s] ERROR
Running ‘testthat.R’ [70s/88s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(dabestr)
Attaching package: 'dabestr'
The following object is masked from 'package:base':
load
>
> test_check("dabestr")
The character(0) mean difference between Test 1 and Control 1 is 0.585 [95%CI 0.307, 0.869].
The p-value of the two-sided permutation t-test is 0.0004, calculated for legacy purposes only.
The character(0) mean difference between Test 2 and Control 2 is -1.058 [95%CI -1.52, -0.577].
The p-value of the two-sided permutation t-test is 0.0002, calculated for legacy purposes only.
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 141 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test_001_plotter.R:2:3', 'test_002_forest_plot.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_002_plot_components.R:15:5'): Returns a list with correct components for valid inputs ──
result[[1]] has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 141 ]
Deleting unused snapshots:
• 001_plotter/deltadelta-mean-diff.svg
• 001_plotter/minimeta-mean-diff.svg
• 001_plotter/multigroup-baseline-colour-mean-diff.svg
• 001_plotter/multigroup-baseline-mean-diff.svg
• 001_plotter/multigroup-sequential-mean-diff.svg
• 001_plotter/multigroup-unpaired-mean-diff-colour.svg
• 001_plotter/multigroup-unpaired-mean-diff.svg
• 001_plotter/proportion-baseline-flow-false-mean-diff.svg
• 001_plotter/proportion-baseline-mean-diff.svg
• 001_plotter/proportion-paired-mean-diff-float-false.svg
• 001_plotter/proportion-paired-mean-diff-float-true.svg
• 001_plotter/proportion-sequential-mean-diff.svg
• 001_plotter/proportion-unpaired-mean-diff-float-false.svg
• 001_plotter/proportion-unpaired-mean-diff-float-true.svg
• 001_plotter/proportion-unpaired-multigroup-mean-diff.svg
• 001_plotter/two-groups-unpaired-mean-diff-colour-float-false.svg
• 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-false.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-true.svg
• 002_forest_plot/deltadelta-forest-plot-mean-diff.svg
• 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg
• 002_forest_plot/minimeta-forest-plot-mean-diff.svg
• 002_forest_plot/minimeta-forest-plot-median-diff.svg
• 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [226s/284s] OK
- checking PDF version of manual ... [6s/7s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR