• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘ctbi/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ctbi’ version ‘2.0.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Francois Ritter <ritter.francois@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ctbi’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/12s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] ERROR Running examples in ‘ctbi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ctbi > ### Title: ctbi > ### Aliases: ctbi > > ### ** Examples > > # example of the contaminated sunspot data > example1 <- data.frame(year = 1700:1988,sunspot = as.numeric(sunspot.year)) > example1[sample(1:289,30),'sunspot'] <- NA # contaminate data with missing values > example1[c(5,30,50),'sunspot'] <- c(-50,300,400) # contaminate data with outliers > example1 <- example1[-(70:100),] # create gap in the data > bin.period <- 11 # aggregation performed every 11 years (the year is numeric here) > bin.side <- 1989 # give one side of a bin > bin.FUN <- 'mean' > bin.max.f.NA <- 0.2 # maximum of 20% of missing data per bin > ylim <- c(0,Inf) # negative values are impossible > > list.main <- ctbi(example1,bin.period=bin.period, + bin.side=bin.side,bin.FUN=bin.FUN, + ylim=ylim,bin.max.f.NA=bin.max.f.NA) Error in `[.data.table`(data0, , `:=`(time.bin, hidd.rel.time(x, seq.bin.side)), :   attempt access index 6/6 in VECTOR_ELT Calls: ctbi -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] ERROR   Running ‘testthat.R’ [1s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(ctbi)   >   > test_check("ctbi")   Saving _problems/test_20211229-15.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_20211229.R:13:1'): (code run outside of `test_that()`) ─────────   Error in ``[.data.table`(data0, , `:=`(time.bin, hidd.rel.time(x, seq.bin.side)), by = index.bin)`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. └─ctbi::ctbi(...) at test_20211229.R:13:1    2. ├─data0[, `:=`(time.bin, hidd.rel.time(x, seq.bin.side)), by = index.bin]    3. └─data.table:::`[.data.table`(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE