* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘crownsegmentr’ ... ** this is package ‘crownsegmentr’ version ‘1.0.1’ ** package ‘crownsegmentr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEAgtVT/R.INSTALL3b97144d7e7f58/crownsegmentr/src' clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/crownsegmentr.h:25: In file included from ./../inst/include/ams3d_R_interface.h:25: In file included from ./../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_R_interface_flexible.cpp -o ams3d_R_interface_flexible.o In file included from ams3d_R_interface_flexible.cpp:22: In file included from ../inst/include/ams3d_R_interface.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_R_interface_normalized.cpp -o ams3d_R_interface_normalized.o In file included from ams3d_R_interface_normalized.cpp:22: In file included from ../inst/include/ams3d_R_interface.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_R_interface_terraneous.cpp -o ams3d_R_interface_terraneous.o In file included from ams3d_R_interface_terraneous.cpp:22: In file included from ../inst/include/ams3d_R_interface.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_R_interface_util.cpp -o ams3d_R_interface_util.o In file included from ams3d_R_interface_util.cpp:22: In file included from ../inst/include/ams3d_R_interface.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_flexible.cpp -o ams3d_flexible.o In file included from ams3d_flexible.cpp:22: In file included from ../inst/include/ams3d.h:25: In file included from ../inst/include/spatial.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_kernel.cpp -o ams3d_kernel.o In file included from ams3d_kernel.cpp:22: In file included from ../inst/include/ams3d.h:25: In file included from ../inst/include/spatial.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_normalized.cpp -o ams3d_normalized.o In file included from ams3d_normalized.cpp:22: In file included from ../inst/include/ams3d.h:25: In file included from ../inst/include/spatial.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ams3d_terraneous.cpp -o ams3d_terraneous.o In file included from ams3d_terraneous.cpp:22: In file included from ../inst/include/ams3d.h:25: In file included from ../inst/include/spatial.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spatial_util.cpp -o spatial_util.o In file included from spatial_util.cpp:22: In file included from ../inst/include/spatial_util.h:25: In file included from ../inst/include/spatial_types.h:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/covered_by.hpp:25: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/covered_by/implementation_gc.hpp:16: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/relate/implementation_gc.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/difference.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/gc.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/intersection/interface.hpp:18: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/intersection_insert.hpp:34: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/overlay.hpp:37: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/traverse.hpp:20: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:19: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/graph_util.hpp:13: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr' requested here 411 | property_ptr m_property; | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/geometry/algorithms/detail/overlay/graph/detect_biconnected_components.hpp:244:13: note: in instantiation of template class 'boost::adjacency_list>' requested here 244 | graph_t graph(state.vertex_map.size()); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 112 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 1 warning generated. clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o crownsegmentr.so RcppExports.o ams3d_R_interface_flexible.o ams3d_R_interface_normalized.o ams3d_R_interface_terraneous.o ams3d_R_interface_util.o ams3d_flexible.o ams3d_kernel.o ams3d_normalized.o ams3d_terraneous.o spatial_util.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEAgtVT/R.INSTALL3b97144d7e7f58/crownsegmentr/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEAgtVT/R.INSTALL3b97144d7e7f58/crownsegmentr/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEAgtVT/R.INSTALL3b97144d7e7f58/crownsegmentr/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-crownsegmentr/00new/crownsegmentr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crownsegmentr)