* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘coreCollection’ ...
** this is package ‘coreCollection’ version ‘0.9.5’
** package ‘coreCollection’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (7)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXsx8Oq/R.INSTALLc1f7019a75c78/coreCollection/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreAlgorithm.cpp -o CoreAlgorithm.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreAlgorithmRandomDescent.cpp -o CoreAlgorithmRandomDescent.o
CoreAlgorithmRandomDescent.cpp:10:7: warning: unused variable 'steps' [-Wunused-variable]
   10 |   int steps=0;
      |       ^~~~~
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreCollection.cpp -o CoreCollection.o
CoreCollection.cpp:147:3: warning: delete called on non-final 'CoreMethod' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  147 |   delete m;
      |   ^
CoreCollection.cpp:148:3: warning: delete called on non-final 'CoreAlgorithm' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  148 |   delete a;
      |   ^
2 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreMethod.cpp -o CoreMethod.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreMethodAccessionNearestEntry.cpp -o CoreMethodAccessionNearestEntry.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreMethodEntryEntry.cpp -o CoreMethodEntryEntry.o
CoreMethodEntryEntry.cpp:7:76: warning: unused variable 'l' [-Wunused-variable]
    7 |   int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length();
      |                                                                            ^
CoreMethodEntryEntry.cpp:73:10: warning: unused variable 'd' [-Wunused-variable]
   73 |   double d, nd, sumOfDistances = 0.0;
      |          ^
CoreMethodEntryEntry.cpp:73:13: warning: unused variable 'nd' [-Wunused-variable]
   73 |   double d, nd, sumOfDistances = 0.0;
      |             ^~
3 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreMethodEntryNearestEntry.cpp -o CoreMethodEntryNearestEntry.o
CoreMethodEntryNearestEntry.cpp:7:76: warning: unused variable 'l' [-Wunused-variable]
    7 |   int nl, n = selectedRandomPositions.length(), N = distanceMatrix.nrow(), l=c.length();
      |                                                                            ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CoreSelection.cpp -o CoreSelection.o
CoreSelection.cpp:141:7: warning: unused variable 'N' [-Wunused-variable]
  141 |   int N = dist.nrow();
      |       ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o coreCollection.so CoreAlgorithm.o CoreAlgorithmRandomDescent.o CoreCollection.o CoreMethod.o CoreMethodAccessionNearestEntry.o CoreMethodEntryEntry.o CoreMethodEntryNearestEntry.o CoreSelection.o RcppExports.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXsx8Oq/R.INSTALLc1f7019a75c78/coreCollection/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXsx8Oq/R.INSTALLc1f7019a75c78/coreCollection/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXsx8Oq/R.INSTALLc1f7019a75c78/coreCollection/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-coreCollection/00new/coreCollection/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coreCollection)