* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘coala’ ...
** package ‘coala’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 17.0.5 (1)’
make[1]: Entering directory '/tmp/RtmpdULAOq/R.INSTALL1480213bd81be4/coala/src'
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c parse_ms_output.cpp -o parse_ms_output.o
In file included from parse_ms_output.cpp:2:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from parse_ms_output.cpp:2:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c parse_seqgen_output.cpp -o parse_seqgen_output.o
In file included from parse_seqgen_output.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from parse_seqgen_output.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c parse_trees.cpp -o parse_trees.o
In file included from parse_trees.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from parse_trees.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c seg_sites.cpp -o seg_sites.o
In file included from seg_sites.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from seg_sites.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c stat_fpc.cpp -o stat_fpc.o
In file included from stat_fpc.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from stat_fpc.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c stat_jsfs.cpp -o stat_jsfs.o
In file included from stat_jsfs.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from stat_jsfs.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c stat_mcmf.cpp -o stat_mcmf.o
In file included from stat_mcmf.cpp:2:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from stat_mcmf.cpp:2:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c stat_nucleotide_div.cpp -o stat_nucleotide_div.o
In file included from stat_nucleotide_div.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from stat_nucleotide_div.cpp:1:
In file included from ./../inst/include/coala.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unphase_segsites.cpp -o unphase_segsites.o
In file included from unphase_segsites.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadilloExtensions/sample.h:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadilloExtensions/fixprob.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from unphase_segsites.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadilloExtensions/sample.h:30:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadilloExtensions/fixprob.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/RcppCommon.h:181:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o coala.so RcppExports.o parse_ms_output.o parse_seqgen_output.o parse_trees.o seg_sites.o stat_fpc.o stat_jsfs.o stat_mcmf.o stat_nucleotide_div.o unphase_segsites.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpdULAOq/R.INSTALL1480213bd81be4/coala/src'
make[1]: Entering directory '/tmp/RtmpdULAOq/R.INSTALL1480213bd81be4/coala/src'
make[1]: Leaving directory '/tmp/RtmpdULAOq/R.INSTALL1480213bd81be4/coala/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-coala/00new/coala/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coala)