- using R Under development (unstable) (2024-12-07 r87428)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.4 (1)
Debian flang-new version 19.1.4 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘ccoptimalmatch/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ccoptimalmatch’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘ccoptimalmatch’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/8s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) being_processed.Rd:19: Lost braces; missing escapes or markup?
19 | \item {cluster_case}: {each case forms a cluster with all poosible controls to be matched}
| ^
checkRd: (-1) being_processed.Rd:20: Lost braces; missing escapes or markup?
20 | \item {Patient_Id}: {Unique identifier for each patient}
| ^
checkRd: (-1) being_processed.Rd:21: Lost braces; missing escapes or markup?
21 | \item {case_control}: {binary, if case==Colorectal Cancer, else control}
| ^
checkRd: (-1) being_processed.Rd:22: Lost braces; missing escapes or markup?
22 | \item {case_ind}: {binary, if 1==case, else control}
| ^
checkRd: (-1) being_processed.Rd:23: Lost braces; missing escapes or markup?
23 | \item {JCG}: {Year of Contact}
| ^
checkRd: (-1) being_processed.Rd:24: Lost braces; missing escapes or markup?
24 | \item {entry_year}: {the year that the patient first entrered the database}
| ^
checkRd: (-1) being_processed.Rd:25: Lost braces; missing escapes or markup?
25 | \item {CI}: {Comorbidity Index. Count of chronic diseases before index data}
| ^
checkRd: (-1) being_processed.Rd:26: Lost braces; missing escapes or markup?
26 | \item {age_diff}: {difference of age between cases and controls}
| ^
checkRd: (-1) being_processed.Rd:27: Lost braces; missing escapes or markup?
27 | \item {fup_diff}: {difference of follow-up between cases and controls}
| ^
checkRd: (-1) being_processed.Rd:28: Lost braces; missing escapes or markup?
28 | \item {total_control_per_case}: {total controls that are available to be pooled per case}
| ^
checkRd: (-1) being_processed.Rd:29: Lost braces; missing escapes or markup?
29 | \item {freq_of_controls}: {how many times the control is available to be matched for different cases}
| ^
checkRd: (-1) not_processed.Rd:19: Lost braces; missing escapes or markup?
19 | \item {Patient_Id}: {Unique identifier for each patient}
| ^
checkRd: (-1) not_processed.Rd:20: Lost braces; missing escapes or markup?
20 | \item {JCG}: {Year of Contact}
| ^
checkRd: (-1) not_processed.Rd:21: Lost braces; missing escapes or markup?
21 | \item {Birth_Year}: {Patient's year of birth}
| ^
checkRd: (-1) not_processed.Rd:22: Lost braces; missing escapes or markup?
22 | \item {Gender}: {Patient's Gender}
| ^
checkRd: (-1) not_processed.Rd:23: Lost braces; missing escapes or markup?
23 | \item {Practice_Id}: {Patient's general practice}
| ^
checkRd: (-1) not_processed.Rd:24: Lost braces; missing escapes or markup?
24 | \item {case_control}: {binary, if case==Colorectal Cancer, else control}
| ^
checkRd: (-1) not_processed.Rd:25: Lost braces; missing escapes or markup?
25 | \item {entry_year}: {the year that the patient first entrered the database}
| ^
checkRd: (-1) not_processed.Rd:26: Lost braces; missing escapes or markup?
26 | \item {fup_diff}: {difference of follow-up between cases and controls}
| ^
checkRd: (-1) not_processed.Rd:27: Lost braces; missing escapes or markup?
27 | \item {CI}: {Comorbidity Index. Count of chronic diseases before index data}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/3s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [19s/24s] OK
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/0s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE