• using R Under development (unstable) (2025-10-31 r88977)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (7)     Debian flang-new version 19.1.7 (7)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘cancerradarr/DESCRIPTION’ ... OK
• this is package ‘cancerradarr’ version ‘2.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cancerradarr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/16s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/12s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [372s/443s] ERROR   Running ‘testthat.R’ [372s/443s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(cancerradarr)   >   > test_check("cancerradarr")         processing file: static_report.Rmd      > input_file_test.xlsx has been created, please fill it with cancer registry data   > Reading /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cancerradarr/extdata/ex_cancerRADAR_input_filled.xlsx   > Reference population aggregation   custom aggregation ============>------------------ 42% | ETA: 4s      > Aggregation level: un_region    - Data aggregation..   custom aggregation ==>---------------------------- 8% | ETA: 30s   custom aggregation =====>------------------------- 16% | ETA: 31s   custom aggregation =======>----------------------- 23% | ETA: 31s   custom aggregation ===========>------------------- 38% | ETA: 19s   custom aggregation ==============>---------------- 47% | ETA: 16s   custom aggregation =================>------------- 55% | ETA: 14s   custom aggregation ======================>-------- 73% | ETA: 8s   custom aggregation ========================>------ 79% | ETA: 7s   custom aggregation ========================>------ 80% | ETA: 7s   custom aggregation =========================>----- 84% | ETA: 6s   custom aggregation ==========================>---- 88% | ETA: 5s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: un_subregion    - Data aggregation..   custom aggregation ==>---------------------------- 6% | ETA: 1m   custom aggregation ==>---------------------------- 7% | ETA: 2m   custom aggregation ==>---------------------------- 8% | ETA: 2m   custom aggregation ===>--------------------------- 9% | ETA: 2m   custom aggregation ===>--------------------------- 10% | ETA: 2m   custom aggregation ====>-------------------------- 12% | ETA: 2m   custom aggregation ====>-------------------------- 14% | ETA: 2m   custom aggregation =====>------------------------- 15% | ETA: 2m   custom aggregation =====>------------------------- 17% | ETA: 2m   custom aggregation ======>------------------------ 20% | ETA: 2m   custom aggregation =======>----------------------- 22% | ETA: 2m   custom aggregation ========>---------------------- 26% | ETA: 2m   custom aggregation =========>--------------------- 29% | ETA: 2m   custom aggregation =========>--------------------- 30% | ETA: 2m   custom aggregation ==========>-------------------- 33% | ETA: 2m   custom aggregation ===========>------------------- 36% | ETA: 1m   custom aggregation ==============>---------------- 46% | ETA: 1m   custom aggregation ===============>--------------- 49% | ETA: 1m   custom aggregation ================>-------------- 52% | ETA: 1m   custom aggregation ================>-------------- 53% | ETA: 1m   custom aggregation =================>------------- 57% | ETA: 48s   custom aggregation ==================>------------ 59% | ETA: 46s   custom aggregation ====================>---------- 65% | ETA: 37s   custom aggregation ====================>---------- 68% | ETA: 35s   custom aggregation =====================>--------- 70% | ETA: 32s   custom aggregation ======================>-------- 72% | ETA: 30s   custom aggregation =======================>------- 75% | ETA: 26s   custom aggregation ========================>------ 79% | ETA: 23s   custom aggregation ========================>------ 81% | ETA: 20s   custom aggregation =========================>----- 85% | ETA: 16s   custom aggregation ===========================>--- 91% | ETA: 9s   custom aggregation ============================>-- 95% | ETA: 5s   custom aggregation =============================>- 97% | ETA: 3s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: hdi_cat    - Data aggregation..   custom aggregation =====>------------------------- 18% | ETA: 21s   custom aggregation =======>----------------------- 24% | ETA: 21s   custom aggregation =========>--------------------- 31% | ETA: 21s   custom aggregation ===============>--------------- 50% | ETA: 13s   custom aggregation ==================>------------ 60% | ETA: 11s   custom aggregation ====================>---------- 65% | ETA: 10s   custom aggregation =======================>------- 76% | ETA: 7s   custom aggregation ==========================>---- 86% | ETA: 4s   custom aggregation ============================>-- 93% | ETA: 2s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: any_migr    - Data aggregation..   custom aggregation =====================>--------- 71% | ETA: 1s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: asr_rank_cat    - Data aggregation..   custom aggregation ==>---------------------------- 6% | ETA: 34s   custom aggregation =====>------------------------- 15% | ETA: 30s   custom aggregation =======>----------------------- 24% | ETA: 27s   custom aggregation ==========>-------------------- 32% | ETA: 24s   custom aggregation =============>----------------- 43% | ETA: 19s   custom aggregation ===============>--------------- 51% | ETA: 17s   custom aggregation ===================>----------- 62% | ETA: 12s   custom aggregation =============================>- 98% | ETA: 1s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..      > /home/hornik/tmp/scratch/RtmpT5bqUU/file28df7646cb2760.xlsx created!         processing file: static_report.Rmd   [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-create_static_report.R:35:5'): create_static_report works with example output file ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─cancerradarr::create_static_report(temp_file) at test-create_static_report.R:35:5    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")   ── Error ('test_cancerradarr.R:38:3'): Output file creation ────────────────────   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─cancerradarr::create_static_report(file.out) at test_cancerradarr.R:38:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")      [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/6s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR