* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘bnlearn’ ... ** package ‘bnlearn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.0 (rc4-1)’ make[1]: Entering directory '/tmp/RtmptZcOV4/R.INSTALL149ab352349c71/bnlearn/src' clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/arcs2amat.c -o arcs/arcs2amat.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/arcs2elist.c -o arcs/arcs2elist.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/bind.c -o arcs/bind.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/filter.arcs.c -o arcs/filter.arcs.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/hash.c -o arcs/hash.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c arcs/is.row.equal.c -o arcs/is.row.equal.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/bayesian.network.c -o bnlearn/bayesian.network.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/bn.recovery.c -o bnlearn/bn.recovery.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/cache.structure.c -o bnlearn/cache.structure.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/cextend.c -o bnlearn/cextend.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/colliders.c -o bnlearn/colliders.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/cpdag.c -o bnlearn/cpdag.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/fitted.c -o bnlearn/fitted.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/nparams.c -o bnlearn/nparams.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c bnlearn/shd.c -o bnlearn/shd.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/allocations.c -o core/allocations.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/contingency.tables.c -o core/contingency.tables.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/correlation.c -o core/correlation.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/covariance.matrix.c -o core/covariance.matrix.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/data.table.c -o core/data.table.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/math.functions.c -o core/math.functions.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/moments.c -o core/moments.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/sampling.c -o core/sampling.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/sets.c -o core/sets.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c core/uppertriangular.c -o core/uppertriangular.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c fitted/enums.c -o fitted/enums.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c fitted/fitted.c -o fitted/fitted.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c foreign/parse.c -o foreign/parse.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c globals.c -o globals.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/acyclic.c -o graphs/acyclic.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/is.dag.c -o graphs/is.dag.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/path.c -o graphs/path.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/pdag2dag.c -o graphs/pdag2dag.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/random/graph.generation.c -o graphs/random/graph.generation.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c graphs/topological.ordering.c -o graphs/topological.ordering.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/likelihood.weighting.c -o inference/likelihood.weighting.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/loglikelihood/common.c -o inference/loglikelihood/common.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/loglikelihood/discrete.c -o inference/loglikelihood/discrete.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/loglikelihood/gaussian.c -o inference/loglikelihood/gaussian.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/loglikelihood/conditional.gaussian.c -o inference/loglikelihood/conditional.gaussian.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/loss.c -o inference/loss.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rbn.c -o inference/rbn.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rinterface/loglikelihood.c -o inference/rinterface/loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rinterface/loss.c -o inference/rinterface/loss.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rinterface/cpdist.c -o inference/rinterface/cpdist.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rinterface/rbn.c -o inference/rinterface/rbn.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c inference/rinterface/likelihood.weighting.c -o inference/rinterface/likelihood.weighting.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/averaging/averaging.c -o learning/averaging/averaging.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/averaging/bootstrap.c -o learning/averaging/bootstrap.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/local/mi.matrix.c -o learning/local/mi.matrix.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/score/hc.cache.lookup.c -o learning/score/hc.cache.lookup.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/score/score.delta.c -o learning/score/score.delta.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c learning/score/tabu.c -o learning/score/tabu.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c math/conditional.least.squares.c -o math/conditional.least.squares.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c math/least.squares.c -o math/least.squares.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c math/linear.algebra.c -o math/linear.algebra.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/common.c -o minimal/common.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/data.frame.c -o minimal/data.frame.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/strings.c -o minimal/strings.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/table.c -o minimal/table.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/tiers.c -o minimal/tiers.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c minimal/unique.c -o minimal/unique.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/discrete/classic_discrete.c -o parameters/discrete/classic_discrete.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/discrete/hierarchical_dirichlet.c -o parameters/discrete/hierarchical_dirichlet.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/rinterface/classic_discrete.c -o parameters/rinterface/classic_discrete.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/rinterface/hierarchical_dirichlet.c -o parameters/rinterface/hierarchical_dirichlet.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/rinterface/mixture_ordinary_least_squares.c -o parameters/rinterface/mixture_ordinary_least_squares.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c parameters/rinterface/ordinary_least_squares.c -o parameters/rinterface/ordinary_least_squares.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c predict/map.lw.c -o predict/map.lw.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c predict/predict.c -o predict/predict.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c preprocessing/dedup.c -o preprocessing/dedup.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c preprocessing/discretize.c -o preprocessing/discretize.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c preprocessing/enums.c -o preprocessing/enums.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c sanitization/cg.assumptions.c -o sanitization/cg.assumptions.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c sanitization/covariance.c -o sanitization/covariance.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c sanitization/data.c -o sanitization/data.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/alpha.star.c -o scores/alpha.star.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/cg.loglikelihood.c -o scores/cg.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/cg.predictive.loglikelihood.c -o scores/cg.predictive.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/cg.nal.c -o scores/cg.nal.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/custom.score.c -o scores/custom.score.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/dirichlet.averaged.posterior.c -o scores/dirichlet.averaged.posterior.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/dirichlet.posterior.c -o scores/dirichlet.posterior.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/discrete.loglikelihood.c -o scores/discrete.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/discrete.nal.c -o scores/discrete.nal.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/discrete.predictive.loglikelihood.c -o scores/discrete.predictive.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/enum.c -o scores/enum.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/gaussian.loglikelihood.c -o scores/gaussian.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/gaussian.nal.c -o scores/gaussian.nal.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/gaussian.predictive.loglikelihood.c -o scores/gaussian.predictive.loglikelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/graph.priors.c -o scores/graph.priors.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/nml_regret.c -o scores/nml_regret.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/nml_regret_table.c -o scores/nml_regret_table.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/normalized.maximum.likelihood.c -o scores/normalized.maximum.likelihood.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/per.node.score.c -o scores/per.node.score.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c scores/wishart.posterior.c -o scores/wishart.posterior.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c test.counter.c -o test.counter.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/conditional.gaussian/cg.mutual.information.c -o tests/conditional.gaussian/cg.mutual.information.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/discrete/df.adjust.c -o tests/discrete/df.adjust.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/discrete/discrete.tests.c -o tests/discrete/discrete.tests.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/discrete/jonckheere.c -o tests/discrete/jonckheere.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/discrete/shrinkage.c -o tests/discrete/shrinkage.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/enums.c -o tests/enums.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/gaussian/df.adjust.c -o tests/gaussian/df.adjust.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/gaussian/gaussian.tests.c -o tests/gaussian/gaussian.tests.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/gaussian/shrinkage.c -o tests/gaussian/shrinkage.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/patterns/allsubs.test.c -o tests/patterns/allsubs.test.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/patterns/ctest.c -o tests/patterns/ctest.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/patterns/roundrobin.test.c -o tests/patterns/roundrobin.test.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/patterns/utest.c -o tests/patterns/utest.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/permutation/discrete.monte.carlo.c -o tests/permutation/discrete.monte.carlo.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/permutation/gaussian.monte.carlo.c -o tests/permutation/gaussian.monte.carlo.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/allsubs.test.c -o tests/rinterface/allsubs.test.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/ctest.c -o tests/rinterface/ctest.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/htest.c -o tests/rinterface/htest.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/indep.test.c -o tests/rinterface/indep.test.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/roundrobin.test.c -o tests/rinterface/roundrobin.test.o clang-18 -std=gnu17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-strict-prototypes -c tests/rinterface/utest.c -o tests/rinterface/utest.o clang-18 -std=gnu17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bnlearn.so arcs/arcs2amat.o arcs/arcs2elist.o arcs/bind.o arcs/filter.arcs.o arcs/hash.o arcs/is.row.equal.o bnlearn/bayesian.network.o bnlearn/bn.recovery.o bnlearn/cache.structure.o bnlearn/cextend.o bnlearn/colliders.o bnlearn/cpdag.o bnlearn/fitted.o bnlearn/nparams.o bnlearn/shd.o core/allocations.o core/contingency.tables.o core/correlation.o core/covariance.matrix.o core/data.table.o core/math.functions.o core/moments.o core/sampling.o core/sets.o core/uppertriangular.o fitted/enums.o fitted/fitted.o foreign/parse.o globals.o graphs/acyclic.o graphs/is.dag.o graphs/path.o graphs/pdag2dag.o graphs/random/graph.generation.o graphs/topological.ordering.o inference/likelihood.weighting.o inference/loglikelihood/common.o inference/loglikelihood/discrete.o inference/loglikelihood/gaussian.o inference/loglikelihood/conditional.gaussian.o inference/loss.o inference/rbn.o inference/rinterface/loglikelihood.o inference/rinterface/loss.o inference/rinterface/cpdist.o inference/rinterface/rbn.o inference/rinterface/likelihood.weighting.o learning/averaging/averaging.o learning/averaging/bootstrap.o learning/local/mi.matrix.o learning/score/hc.cache.lookup.o learning/score/score.delta.o learning/score/tabu.o math/conditional.least.squares.o math/least.squares.o math/linear.algebra.o minimal/common.o minimal/data.frame.o minimal/strings.o minimal/table.o minimal/tiers.o minimal/unique.o parameters/discrete/classic_discrete.o parameters/discrete/hierarchical_dirichlet.o parameters/rinterface/classic_discrete.o parameters/rinterface/hierarchical_dirichlet.o parameters/rinterface/mixture_ordinary_least_squares.o parameters/rinterface/ordinary_least_squares.o predict/map.lw.o predict/predict.o preprocessing/dedup.o preprocessing/discretize.o preprocessing/enums.o sanitization/cg.assumptions.o sanitization/covariance.o sanitization/data.o scores/alpha.star.o scores/cg.loglikelihood.o scores/cg.predictive.loglikelihood.o scores/cg.nal.o scores/custom.score.o scores/dirichlet.averaged.posterior.o scores/dirichlet.posterior.o scores/discrete.loglikelihood.o scores/discrete.nal.o scores/discrete.predictive.loglikelihood.o scores/enum.o scores/gaussian.loglikelihood.o scores/gaussian.nal.o scores/gaussian.predictive.loglikelihood.o scores/graph.priors.o scores/nml_regret.o scores/nml_regret_table.o scores/normalized.maximum.likelihood.o scores/per.node.score.o scores/wishart.posterior.o test.counter.o tests/conditional.gaussian/cg.mutual.information.o tests/discrete/df.adjust.o tests/discrete/discrete.tests.o tests/discrete/jonckheere.o tests/discrete/shrinkage.o tests/enums.o tests/gaussian/df.adjust.o tests/gaussian/gaussian.tests.o tests/gaussian/shrinkage.o tests/patterns/allsubs.test.o tests/patterns/ctest.o tests/patterns/roundrobin.test.o tests/patterns/utest.o tests/permutation/discrete.monte.carlo.o tests/permutation/gaussian.monte.carlo.o tests/rinterface/allsubs.test.o tests/rinterface/ctest.o tests/rinterface/htest.o tests/rinterface/indep.test.o tests/rinterface/roundrobin.test.o tests/rinterface/utest.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmptZcOV4/R.INSTALL149ab352349c71/bnlearn/src' make[1]: Entering directory '/tmp/RtmptZcOV4/R.INSTALL149ab352349c71/bnlearn/src' make[1]: Leaving directory '/tmp/RtmptZcOV4/R.INSTALL149ab352349c71/bnlearn/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-bnlearn/00new/bnlearn/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bnlearn)