• using R Under development (unstable) (2023-09-23 r85215)
• using platform: x86_64-pc-linux-gnu
• R was compiled by
      Debian clang version 16.0.6 (15)
      GNU Fortran (Debian 13.2.0-4) 13.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bnclassify/DESCRIPTION’ ... OK
• this is package ‘bnclassify’ version ‘0.4.7’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘bnclassify’ can be installed ... OK
  See the install log for details.
• used C++ compiler: ‘Debian clang version 16.0.6 (15)’
• checking C++ specification ... NOTE
    Specified C++11: please drop specification unless essential
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/18s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  Documented arguments not in \usage in documentation object 'augment_kdb':
    ‘...’
  
  Documented arguments not in \usage in documentation object 'graph_connected_components':
    ‘x’
  
  Documented arguments not in \usage in documentation object 'graph_subgraph':
    ‘x’
  
  Documented arguments not in \usage in documentation object 'map':
    ‘x’
  
  Functions with \usage entries need to have the appropriate \alias
  entries, and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [40s/48s] ERROR
    Running ‘testthat.R’ [39s/47s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(bnclassify)
    >
    > test_check("bnclassify")
    -1.54485 -1.50696 -1.31785 -1.2128 -1.4612 -1.20742 -1.26966 -1.67055 -0.440312 -1.11241 -4.29046 -4.29046 -0.545227 -0.93827 -4.23411 -4.23411
    [ FAIL 2 | WARN 3 | SKIP 39 | PASS 587 ]
    
    ══ Skipped tests (39) ══════════════════════════════════════════════════════════
    • Local rdata file (1): 'test-infer-anb-cpp.R:48:2'
    • On CRAN (17): 'test-cv.R:65:3', 'test-cv.R:75:3', 'test-cv.R:85:3',
      'test-cv.R:107:3', 'test-cv.R:117:3', 'test-cv.R:188:3',
      'test-learn-params-wanbia.r:20:3', 'test-learn-params-wanbia.r:29:3',
      'test-learn-params-wanbia.r:39:3', 'test-learn-struct.R:20:3',
      'test-learn-struct.R:32:3', 'test-learn-struct.R:50:3',
      'test-learn-struct.R:59:3', 'test-learn-struct.R:70:3',
      'test-wrap-mlr.R:4:3', 'test-wrap-mlr.R:19:3', 'test-wrap-mlr.R:41:3'
    • empty test (20): 'test-anb-families.R:21:1', 'test-basic-assert.R:3:1',
      'test-cpp-table.R:18:1', 'test-cpp-table.R:28:1', 'test-cpp-table.R:39:1',
      'test-cpp-table.R:44:1', 'test-cpp-table.R:62:1', 'test-cv.R:148:1',
      'test-infer-anb-cpp.R:31:1', 'test-infer-anb.R:37:1', 'test-infer.R:16:1',
      'test-infer.R:61:1', 'test-infer.R:105:1', 'test-learn-aode.r:50:1',
      'test-learn-aode.r:82:1', 'test-learn-params-wanbia.r:12:1',
      'test-predict.R:3:1', 'test-update.R:61:1', 'test-wrap-grain.R:3:1',
      'test-wrap-grain.R:14:1'
    • gRain has removed the predict function (1): 'test-wrap-grain.R:28:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-anb-dag.R:38:3'): Accessors ────────────────────────────────────
    Error in `graphNEL2_graph_internal(dg)`: inherits(x, "graphNEL") is not TRUE
    Backtrace:
        ▆
     1. └─bnclassify:::random_aug_nb_dag(...) at test-anb-dag.R:38:2
     2. └─bnclassify:::graphNEL2_graph_internal(dg) at tests/testthat/helper-common.R:44:2
     3. └─base::stopifnot(inherits(x, "graphNEL"))
    ── Error ('test-dag.R:8:3'): Condition on ──────────────────────────────────────
    Error in `graphNEL2_graph_internal(g)`: inherits(x, "graphNEL") is not TRUE
    Backtrace:
        ▆
     1. └─bnclassify:::graphNEL2_graph_internal(g) at test-dag.R:8:2
     2. └─base::stopifnot(inherits(x, "graphNEL"))
    
    [ FAIL 2 | WARN 3 | SKIP 39 | PASS 587 ]
    Error: Test failures
    Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [34s/47s] OK
• checking PDF version of manual ... [7s/8s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 2 NOTEs