• using R Under development (unstable) (2023-12-04 r85659)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 17.0.5 (1)     Debian flang-new version 17.0.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘analogue/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘analogue’ version ‘0.17-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘analogue’ can be installed ... OK See the install log for details.
• used C compiler: ‘Debian clang version 17.0.5 (1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking whether startup messages can be suppressed ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [43s/47s] OK
• checking Rd files ... [2s/2s] NOTE checkRd: (-1) cma.Rd:106-107: Lost braces in \itemize; meant \describe ? checkRd: (-1) cma.Rd:108-110: Lost braces in \itemize; meant \describe ? checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \& checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \& checkRd: (-1) mat.Rd:162: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:163-164: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:165-168: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:175-179: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:180-181: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:182-183: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:184-186: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:187-188: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:189-190: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \& checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \& checkRd: (-1) predict.mat.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:78-79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:82-83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:85-86: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:87-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:89-90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:115-118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:119-121: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:122-124: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \& checkRd: (-1) scores.prcurve.Rd:35: Lost braces; missing escapes or markup?     35 | variables {columns} then the matrix returned by \code{scores.prcurve}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [18s/20s] OK
• checking differences from ‘analogue-Ex.Rout’ to ‘analogue-Ex.Rout.save’ ... OK 2c2 < This is vegan 2.6-4 --- > This is vegan 2.5-7
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/6s] OK   Running ‘test-all.R’ [5s/6s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [21s/25s] OK
• checking PDF version of manual ... [17s/19s] OK
• checking HTML version of manual ... [9s/13s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE